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The map label for this gene is qseD [H]

Identifier: 209695463

GI number: 209695463

Start: 2148040

End: 2148921

Strand: Direct

Name: qseD [H]

Synonym: VSAL_I2006

Alternate gene names: 209695463

Gene position: 2148040-2148921 (Clockwise)

Preceding gene: 209695460

Following gene: 209695467

Centisome position: 64.6

GC content: 37.07

Gene sequence:

>882_bases
ATGAACATAGAAAGTAAATGGTTAGAAGATTTTTTAGTATTGGCTAAAGTTAGAAATTTTTCACAAGCAGCCATACTTAG
AAATGTAACCCAGCCGGCATTTAGCCGTAGGATCCGTTTATTAGAAGAGACAATAGGTGCTGAATTAATAAATCGAAAAA
GTAAGCCTATTGGCCTAACTCCTAGCGGTAAGTTATTTCGAGTGACCGCTAGGACATTGGTGAATCAAATTGTGACAGGT
ATTGACCAAATTTCAGACTTATCTCAACTTGGAGGGAATGTTGTTCAAGTTGCAGCGGCGCATTCATTAGCAACCCATCT
AATTCCTAAGATTCAAAAAATATTACCCGAAGGTAATTACAAACCTATATTAAGTATTGAAGCTATTGATGTTGACCAAG
CGACTAAAGAGCTAAGAGATGGAGCGTGCGACATTCTACTGGCGTTTGATGATGATATTTTAAGGTTACCGCCATACCAA
TCATTACTAATTGCAAAAACAGAGCTTTTACCTGTGAGCGCATGTGACGATAATGGGGCTCCTATTTATCAATTTGATAA
TAAAAATGTAGTTCCATGGCTTGCTTATAGTTCTACTTCATATATGGGAAGACAAGTTGAAACTGTAAAAGATGAGGTTT
TATTGAAACCCGTATTTTCATCGTCAATGACAGATATGTTGAAGATGCTAGTACTTGATAAACAAGGCATTGCTTGGCTT
CCTGCTTATAGTATTGAGAAGGAATTGAAACAAAAAAAAGTTGCAATCATTGGCGAGCAATCATTACGACTTCCAATTGA
ATACTATGCTTATCGCTATCAAGCGAGATTGCATCCCGCAGGAGAGAAAGTGTGGAACATTCTTTGCGAAATAGAATCTT
AG

Upstream 100 bases:

>100_bases
TTTATTAGCGTTATCTAGCATATAAAGATTCAATAAATAGCAATAATACACTTTAGGAATAGTGATATTTGCCCTTATAA
GTTTGCGATGAGAAAATGAC

Downstream 100 bases:

>100_bases
TTTTTGTCGATGGGTTCTTTTTCTAAATTTATTGTTGGCACACAAAGAATCAAAATCGATGCGCTGATGATGGACGCCAT
GAGATCTGTTGGCCAATGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Quorum-sensing regulator protein D [H]

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MNIESKWLEDFLVLAKVRNFSQAAILRNVTQPAFSRRIRLLEETIGAELINRKSKPIGLTPSGKLFRVTARTLVNQIVTG
IDQISDLSQLGGNVVQVAAAHSLATHLIPKIQKILPEGNYKPILSIEAIDVDQATKELRDGACDILLAFDDDILRLPPYQ
SLLIAKTELLPVSACDDNGAPIYQFDNKNVVPWLAYSSTSYMGRQVETVKDEVLLKPVFSSSMTDMLKMLVLDKQGIAWL
PAYSIEKELKQKKVAIIGEQSLRLPIEYYAYRYQARLHPAGEKVWNILCEIES

Sequences:

>Translated_293_residues
MNIESKWLEDFLVLAKVRNFSQAAILRNVTQPAFSRRIRLLEETIGAELINRKSKPIGLTPSGKLFRVTARTLVNQIVTG
IDQISDLSQLGGNVVQVAAAHSLATHLIPKIQKILPEGNYKPILSIEAIDVDQATKELRDGACDILLAFDDDILRLPPYQ
SLLIAKTELLPVSACDDNGAPIYQFDNKNVVPWLAYSSTSYMGRQVETVKDEVLLKPVFSSSMTDMLKMLVLDKQGIAWL
PAYSIEKELKQKKVAIIGEQSLRLPIEYYAYRYQARLHPAGEKVWNILCEIES
>Mature_293_residues
MNIESKWLEDFLVLAKVRNFSQAAILRNVTQPAFSRRIRLLEETIGAELINRKSKPIGLTPSGKLFRVTARTLVNQIVTG
IDQISDLSQLGGNVVQVAAAHSLATHLIPKIQKILPEGNYKPILSIEAIDVDQATKELRDGACDILLAFDDDILRLPPYQ
SLLIAKTELLPVSACDDNGAPIYQFDNKNVVPWLAYSSTSYMGRQVETVKDEVLLKPVFSSSMTDMLKMLVLDKQGIAWL
PAYSIEKELKQKKVAIIGEQSLRLPIEYYAYRYQARLHPAGEKVWNILCEIES

Specific function: Down-regulates expression of the flagellar regulon, decreasing motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790783, Length=296, Percent_Identity=41.554054054054, Blast_Score=241, Evalue=5e-65,
Organism=Escherichia coli, GI145693105, Length=109, Percent_Identity=30.2752293577982, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32866; Mature: 32866

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIESKWLEDFLVLAKVRNFSQAAILRNVTQPAFSRRIRLLEETIGAELINRKSKPIGLT
CCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PSGKLFRVTARTLVNQIVTGIDQISDLSQLGGNVVQVAAAHSLATHLIPKIQKILPEGNY
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHCCCCCC
KPILSIEAIDVDQATKELRDGACDILLAFDDDILRLPPYQSLLIAKTELLPVSACDDNGA
CCEEEEEEECHHHHHHHHCCCCEEEEEEECCCEEECCCCHHHHHHHHHEEEEECCCCCCC
PIYQFDNKNVVPWLAYSSTSYMGRQVETVKDEVLLKPVFSSSMTDMLKMLVLDKQGIAWL
EEEEECCCCCCEEEEECCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC
PAYSIEKELKQKKVAIIGEQSLRLPIEYYAYRYQARLHPAGEKVWNILCEIES
CCHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHEECC
>Mature Secondary Structure
MNIESKWLEDFLVLAKVRNFSQAAILRNVTQPAFSRRIRLLEETIGAELINRKSKPIGLT
CCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PSGKLFRVTARTLVNQIVTGIDQISDLSQLGGNVVQVAAAHSLATHLIPKIQKILPEGNY
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHCCCCCC
KPILSIEAIDVDQATKELRDGACDILLAFDDDILRLPPYQSLLIAKTELLPVSACDDNGA
CCEEEEEEECHHHHHHHHCCCCEEEEEEECCCEEECCCCHHHHHHHHHEEEEECCCCCCC
PIYQFDNKNVVPWLAYSSTSYMGRQVETVKDEVLLKPVFSSSMTDMLKMLVLDKQGIAWL
EEEEECCCCCCEEEEECCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC
PAYSIEKELKQKKVAIIGEQSLRLPIEYYAYRYQARLHPAGEKVWNILCEIES
CCHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7876157 [H]