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The map label for this gene is ccmH [H]

Identifier: 209695460

GI number: 209695460

Start: 2145205

End: 2145660

Strand: Direct

Name: ccmH [H]

Synonym: VSAL_I2003

Alternate gene names: 209695460

Gene position: 2145205-2145660 (Clockwise)

Preceding gene: 209695459

Following gene: 209695463

Centisome position: 64.51

GC content: 37.06

Gene sequence:

>456_bases
ATGAAGCGTTTTTTTAATCTATTGGTGTCATTACTCTGTTTATGTTCCGTCTTTTCCGTTAATGCATCATTGGATAGCAA
TAATAGTTTATTTGTTGCCGCTGACAAAGCGACAATAGAAAGCGTAGAACTGTTTAAGTTTGATTCTTTAGAGCAACAAC
AGCAAGCGATCGCCTTGGCAAAAAGCTTACGTTGTCCACAATGTCAAAATCAAAACTTAATTGAGTCAAATTCACCGATA
GCGAAAGATCTGCGTTTAGAAGTGTATCAGCAAATTAAAGCGGGAAAGACTGATGAAGAGGTCGTGAGTTTCATGACGCA
TCGTTTTGGCGATTTTGTTTTATATGAACCGCCATTAAATGCTAAAACCTATGTACTTTGGCTATTGCCGTTATTGTTAC
TTATTGGCTTTGGCATTATGGCGGTTAAATCAGTGAAGAAGAATCGTAAAGAGTAA

Upstream 100 bases:

>100_bases
TCTTAATTGATCAGAAAGGAGTGATATTGCATCGCTTTACTGGCGCTTTAGATGCGAAAAAATGGCAACGTGAGTTTGTG
GATTTTTTTGGGGAGAAATA

Downstream 100 bases:

>100_bases
GTTTAGCTTGTTAGTGCGGTGTGCTCTGCTTCATAAGACCATTCAACACAATATTTTGCTAATATTTCTAGTGAGTCTAA
GCACTGCTTGGGTGAATTCA

Product: cytochrome c biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MKRFFNLLVSLLCLCSVFSVNASLDSNNSLFVAADKATIESVELFKFDSLEQQQQAIALAKSLRCPQCQNQNLIESNSPI
AKDLRLEVYQQIKAGKTDEEVVSFMTHRFGDFVLYEPPLNAKTYVLWLLPLLLLIGFGIMAVKSVKKNRKE

Sequences:

>Translated_151_residues
MKRFFNLLVSLLCLCSVFSVNASLDSNNSLFVAADKATIESVELFKFDSLEQQQQAIALAKSLRCPQCQNQNLIESNSPI
AKDLRLEVYQQIKAGKTDEEVVSFMTHRFGDFVLYEPPLNAKTYVLWLLPLLLLIGFGIMAVKSVKKNRKE
>Mature_151_residues
MKRFFNLLVSLLCLCSVFSVNASLDSNNSLFVAADKATIESVELFKFDSLEQQQQAIALAKSLRCPQCQNQNLIESNSPI
AKDLRLEVYQQIKAGKTDEEVVSFMTHRFGDFVLYEPPLNAKTYVLWLLPLLLLIGFGIMAVKSVKKNRKE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=102, Percent_Identity=42.156862745098, Blast_Score=99, Evalue=1e-22,
Organism=Escherichia coli, GI1790512, Length=87, Percent_Identity=49.4252873563218, Blast_Score=94, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 17077; Mature: 17077

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRFFNLLVSLLCLCSVFSVNASLDSNNSLFVAADKATIESVELFKFDSLEQQQQAIALA
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHH
KSLRCPQCQNQNLIESNSPIAKDLRLEVYQQIKAGKTDEEVVSFMTHRFGDFVLYEPPLN
HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCC
AKTYVLWLLPLLLLIGFGIMAVKSVKKNRKE
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKRFFNLLVSLLCLCSVFSVNASLDSNNSLFVAADKATIESVELFKFDSLEQQQQAIALA
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHH
KSLRCPQCQNQNLIESNSPIAKDLRLEVYQQIKAGKTDEEVVSFMTHRFGDFVLYEPPLN
HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCC
AKTYVLWLLPLLLLIGFGIMAVKSVKKNRKE
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]