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The map label for this gene is ybaO [H]

Identifier: 209695426

GI number: 209695426

Start: 2110558

End: 2111025

Strand: Direct

Name: ybaO [H]

Synonym: VSAL_I1967

Alternate gene names: 209695426

Gene position: 2110558-2111025 (Clockwise)

Preceding gene: 209695423

Following gene: 209695428

Centisome position: 63.47

GC content: 36.97

Gene sequence:

>468_bases
ATGGGAAAGCATGAACTGGATAAAGTGGATATTACCTTACTTTCTTTACTACAAAAAGACAGTACGATTTCTCTGAGTGA
ACTTGCTGAGGCGGTAAACTTAACGACAACCCCTTGTTGGAAGCGATTAAAGCGCTTAGAAGAGGATGGGGTTATTGAGA
AAAAAGTGGCCTTGTTAAATCCTGAGAAATTGGGACTGAGTTTTAATGCGTTTGTATTAATAAAAACATCAAATCATTCG
CATGAATGGTATTCAAAATTTGTTGATACGGTGTCTGACTTTCCCGAGGTCATGGAGTTTTATCGTATGGCTGGTGAATA
TGATTATATGATGAAAGTTTTAGCTGAAGACATGAAAGCTTTCGATAGCTTCTATAAGAAATTGGTTAATAGTGTAGATG
GTATATCCAATGTGACCAGTACCTTCGCTATGGAACCATTGAAATACACAACGGAATTACCTCTGTAA

Upstream 100 bases:

>100_bases
GGGCGATGTGAATAATTTACCTCTGTTACTTGAGAAAAACTTTGCTATATTTACTGTATATTAGCAGTTAAAGAGAAATA
AATTCTACAGGTGGGAATGA

Downstream 100 bases:

>100_bases
TAAAAGTGAGATCAAAAATGCGCAAGAGCAATTGATGCGCCTTACGCGTTTTTAAACAGATTAAGTACTTATTTGTTTTT
CATTCTCATTAAGCCTTCTT

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MGKHELDKVDITLLSLLQKDSTISLSELAEAVNLTTTPCWKRLKRLEEDGVIEKKVALLNPEKLGLSFNAFVLIKTSNHS
HEWYSKFVDTVSDFPEVMEFYRMAGEYDYMMKVLAEDMKAFDSFYKKLVNSVDGISNVTSTFAMEPLKYTTELPL

Sequences:

>Translated_155_residues
MGKHELDKVDITLLSLLQKDSTISLSELAEAVNLTTTPCWKRLKRLEEDGVIEKKVALLNPEKLGLSFNAFVLIKTSNHS
HEWYSKFVDTVSDFPEVMEFYRMAGEYDYMMKVLAEDMKAFDSFYKKLVNSVDGISNVTSTFAMEPLKYTTELPL
>Mature_154_residues
GKHELDKVDITLLSLLQKDSTISLSELAEAVNLTTTPCWKRLKRLEEDGVIEKKVALLNPEKLGLSFNAFVLIKTSNHSH
EWYSKFVDTVSDFPEVMEFYRMAGEYDYMMKVLAEDMKAFDSFYKKLVNSVDGISNVTSTFAMEPLKYTTELPL

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=67.3333333333333, Blast_Score=222, Evalue=9e-60,
Organism=Escherichia coli, GI1787116, Length=149, Percent_Identity=32.8859060402685, Blast_Score=97, Evalue=4e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17745; Mature: 17613

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKHELDKVDITLLSLLQKDSTISLSELAEAVNLTTTPCWKRLKRLEEDGVIEKKVALLN
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCC
PEKLGLSFNAFVLIKTSNHSHEWYSKFVDTVSDFPEVMEFYRMAGEYDYMMKVLAEDMKA
HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
FDSFYKKLVNSVDGISNVTSTFAMEPLKYTTELPL
HHHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCCCC
>Mature Secondary Structure 
GKHELDKVDITLLSLLQKDSTISLSELAEAVNLTTTPCWKRLKRLEEDGVIEKKVALLN
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCC
PEKLGLSFNAFVLIKTSNHSHEWYSKFVDTVSDFPEVMEFYRMAGEYDYMMKVLAEDMKA
HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
FDSFYKKLVNSVDGISNVTSTFAMEPLKYTTELPL
HHHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]