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The map label for this gene is oppC [H]

Identifier: 209695408

GI number: 209695408

Start: 2085095

End: 2085997

Strand: Direct

Name: oppC [H]

Synonym: VSAL_I1948

Alternate gene names: 209695408

Gene position: 2085095-2085997 (Clockwise)

Preceding gene: 209695407

Following gene: 209695409

Centisome position: 62.71

GC content: 41.86

Gene sequence:

>903_bases
ATGTTAACGAAAAAAGCAAATTTAGAAGCGATCGAGAGTTTCTCTGAAAATCTAGAAATAGAAGGTCGTAGTTTATGGCA
GGATGCCCGTTTACGCTTTATGAGAAATAAAGCCGCGATGATCAGCTTATGTGTATTAACTATAATGACACTTGCTGTTG
TCTTTTTACCGATGTTTAGTCAATACGCTTATGATGATACGGATTGGTATGCATTGCACGAAGCACCAAGCCTTACGCAT
CTTTTTGGCACCGATAGTTTAGGGCGTGACCTTTTTGTACGTACCTTGGTTGGTGGTCGAATCTCCTTGATGGTGGGTAT
TTTAGGAGCACTGGTAGCGGTAGTTATCGGTACGCTTTATGGCGCAACTTCTGGTTTTGTCGGTGGTAAAATCGACCGAG
TTATGATGCGTTTTATTGAGATCCTATACGCGGTTCCATTCATGTTCTTAGTTATTGTACTAGTGACGTTTTTTGGTCGA
AATATTATCCTGATCTTTGTTGCGATCGGTGCCATTGCTTGGCTTGATATGGCACGTATAGTTCGTGGACAAACATTGAG
TTTACGAAGTAAAGAGTTCATTGAAGCGGCACACGTTTGTGGTGTGAGTAAGTGGGGAATTATTACTCGTCATATCGTGC
CTAATGTACTGGGTATTGTTGCGGTATATTCAACGTTACTTATCCCAAGCATGATCTTAACTGAATCATTCCTATCTTTC
CTTGGCTTAGGGGTGCAAGAGCCAATGACGAGTTGGGGGGCTTTACTCCAAGAAGGCTCTCAAACCATGGAAGTGGCTAT
TTGGCAGCTCATTTTCCCTGCGTTATTTATGGTTGTTACCTTGTTCTGTTTTAACTATGTAGGTGATGGTTTACGTGATG
CGCTGGATCCAAAAGACAGATAA

Upstream 100 bases:

>100_bases
CATTTTGATTGGTTTTCTATTCATTCTTTTCAACGCCATCGTTGATGTATTGCTAGCAATAATTGACCCGAAAATTCGTT
ATTAATAGGGGAACGGACGC

Downstream 100 bases:

>100_bases
TCCTCTGTATGGACAGCTAATTATTTAACGGATTTAAGCAGGAAAGAATTATGAGTTTATTAGATGTAAAAGATCTGCGT
GTCGAGTTTACAACTCAAGA

Product: oligopeptide transport system permease protein C

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MLTKKANLEAIESFSENLEIEGRSLWQDARLRFMRNKAAMISLCVLTIMTLAVVFLPMFSQYAYDDTDWYALHEAPSLTH
LFGTDSLGRDLFVRTLVGGRISLMVGILGALVAVVIGTLYGATSGFVGGKIDRVMMRFIEILYAVPFMFLVIVLVTFFGR
NIILIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWGIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSF
LGLGVQEPMTSWGALLQEGSQTMEVAIWQLIFPALFMVVTLFCFNYVGDGLRDALDPKDR

Sequences:

>Translated_300_residues
MLTKKANLEAIESFSENLEIEGRSLWQDARLRFMRNKAAMISLCVLTIMTLAVVFLPMFSQYAYDDTDWYALHEAPSLTH
LFGTDSLGRDLFVRTLVGGRISLMVGILGALVAVVIGTLYGATSGFVGGKIDRVMMRFIEILYAVPFMFLVIVLVTFFGR
NIILIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWGIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSF
LGLGVQEPMTSWGALLQEGSQTMEVAIWQLIFPALFMVVTLFCFNYVGDGLRDALDPKDR
>Mature_300_residues
MLTKKANLEAIESFSENLEIEGRSLWQDARLRFMRNKAAMISLCVLTIMTLAVVFLPMFSQYAYDDTDWYALHEAPSLTH
LFGTDSLGRDLFVRTLVGGRISLMVGILGALVAVVIGTLYGATSGFVGGKIDRVMMRFIEILYAVPFMFLVIVLVTFFGR
NIILIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWGIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSF
LGLGVQEPMTSWGALLQEGSQTMEVAIWQLIFPALFMVVTLFCFNYVGDGLRDALDPKDR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=302, Percent_Identity=68.8741721854305, Blast_Score=394, Evalue=1e-111,
Organism=Escherichia coli, GI1787054, Length=277, Percent_Identity=38.9891696750903, Blast_Score=204, Evalue=5e-54,
Organism=Escherichia coli, GI1787760, Length=257, Percent_Identity=35.7976653696498, Blast_Score=171, Evalue=6e-44,
Organism=Escherichia coli, GI1789889, Length=224, Percent_Identity=33.0357142857143, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1789964, Length=276, Percent_Identity=33.3333333333333, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1788505, Length=226, Percent_Identity=33.6283185840708, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787549, Length=282, Percent_Identity=25.886524822695, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33336; Mature: 33336

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTKKANLEAIESFSENLEIEGRSLWQDARLRFMRNKAAMISLCVLTIMTLAVVFLPMFS
CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QYAYDDTDWYALHEAPSLTHLFGTDSLGRDLFVRTLVGGRISLMVGILGALVAVVIGTLY
HHCCCCCCEEEECCCCCHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GATSGFVGGKIDRVMMRFIEILYAVPFMFLVIVLVTFFGRNIILIFVAIGAIAWLDMARI
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VRGQTLSLRSKEFIEAAHVCGVSKWGIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSF
HCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLGVQEPMTSWGALLQEGSQTMEVAIWQLIFPALFMVVTLFCFNYVGDGLRDALDPKDR
HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCC
>Mature Secondary Structure
MLTKKANLEAIESFSENLEIEGRSLWQDARLRFMRNKAAMISLCVLTIMTLAVVFLPMFS
CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QYAYDDTDWYALHEAPSLTHLFGTDSLGRDLFVRTLVGGRISLMVGILGALVAVVIGTLY
HHCCCCCCEEEECCCCCHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GATSGFVGGKIDRVMMRFIEILYAVPFMFLVIVLVTFFGRNIILIFVAIGAIAWLDMARI
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VRGQTLSLRSKEFIEAAHVCGVSKWGIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSF
HCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLGVQEPMTSWGALLQEGSQTMEVAIWQLIFPALFMVVTLFCFNYVGDGLRDALDPKDR
HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]