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The map label for this gene is oppA [H]

Identifier: 209695407

GI number: 209695407

Start: 2082386

End: 2084050

Strand: Direct

Name: oppA [H]

Synonym: VSAL_I1946

Alternate gene names: 209695407

Gene position: 2082386-2084050 (Clockwise)

Preceding gene: 209695406

Following gene: 209695408

Centisome position: 62.63

GC content: 40.0

Gene sequence:

>1665_bases
ATGTATAAAAATAAAATTACACAAGCAATTTTGCTTGGTGGCTTGTCACTAACACTTGTTGGCTGTGGAGATAAAACCGC
AGAGCAACCAGTAAAAGAAACAAAACCTGCTGAAAAAGCAGTATCAACTGACTCTGTTTATGCCGACGTTCAAGAACTGA
CTCGTGGTAATGGAACAGAAGTAGCCACTCTTGACCCCCACAAATCTCAAGGTGTCCCTGAGTCTCACGTTATTCGTGAT
TTACTTGAAGGTCTTGTTAATCAAGATGCGGCAGGTAATACCATTCCTGGCGTTGCTGAGAGTTGGGAAACGACCGATAA
TAAAAAATTCACTTTCCATTTACGTAAAGACGCTAAGTGGTCAAATGGTGATCCTGTCACTGCGGATGATTTTGTATACA
GCTTCCAACGTGCAGTGGATCCAGCAACCGCTTCTCCATACTCTTGGTATATGGAATATACTAAGATGGCGAACGCAAAA
GACATCGTTGCAGGTAAAAAAGACAAAAGTGAGCTAGGTGTTAAAGCGATTGATGCAAATACATTAGAAGTTCAACTTGA
TACTGCCGTTCCTTATTTTGTGATGATGATGGGTCATACAACAATGATGCCTGTTCATAAAGCCACAATCGAAGAATTTG
GTGATCAGTGGACTAAGCCGGGTAATTTCGTTGGTAACGGTGCATTTGTTGTAAATAAATGGGTTGTGAACGAACGTTTA
GAATTAACTCGTAACGAGCAATATTGGGATAATGCCGATACAAAATTAACGAAAGTGACGTTCTTACCGATTGAAAACCA
AGTGTCGGAAATGAACCGTTTTCTTTCTGGTGAACTCGACTTTACTAATGAATTACCAGTTGAACACTTTAAGCGCTTGA
AAAAAGAAGAACCAGAATCAGTGTCGGTAGTGGGTAGTCTATGTACTTACTATTATTCATTTAATACGAAGAAAGCACCC
TTTGATGATGTTCGAGTTCGTAAAGCGATTTCTTACGCAATTGACCGCCCAATTATATCTGACATTATTTTAGGTCAAGG
CCAAAAACCTGCGTATTTCTTAACACCAGAGATCACGGCTGGCTTTAATCCTGAGCTACCAGCTTACGGTAAAATGACTC
AAGATGAGCGTAATGCTGAAGCGAAACGCTTACTTGTTGAAGCCGGATTTGGTCCTGAAAACCCACTGAAATTTACCCTT
TTATACAACACGTCTGAAAACCATAAGAAAATTGCGGTTGCAGCGGGTTCTATGTGGAAAAAAACACTAGGACTAGAAGT
GGTACTAGAAAATCAAGAATGGAAAACGTACCTAGATTCAAAAGACCAAGGTCAATTTGAAGTAGCGCGTGCTGGATGGT
GTGGCGATTATAATGAAGCGTCTGCTTTCTTGACATTAATGGTGAGTAAAAACACCACGGGTGGTCAACATTACGGAAGT
GCTGAATATGATGCATTGATTGAAAAAGCATTAGCATCAACATCAGAAGAAGAACGTACAGCTATCTACCTACAAGCTGA
ACAGCTATTGGCGAAAGATATGCCAATTGCTCCTATCTATCAGTATGTAAAATCTCGTCTATTATCTCCACAAGTAGGTG
GCTTCCCTGTTGAAAATGCGGAAGAAAAAATCTACTCGAAAGACCTATACATAAAAGCTAAATAA

Upstream 100 bases:

>100_bases
TTTTTAGACGTATTTAACGTTTTTTAGAACATTAAAATGATTGGCAAATCGCTTTGTCCGAAGATTGTCATGGATGCAAA
AAATGTATTGGAGTTAATGC

Downstream 100 bases:

>100_bases
ACTTAGCAAATAAAAACTATAAGTATAAGCCACTGCATACAGTTCATGTATGTAGTGGTTAGATCCACCTTTTAATTATT
TTTGTCACAGACACTGGAAG

Product: oligopeptide transport system permease protein B

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 554; Mature: 554

Protein sequence:

>554_residues
MYKNKITQAILLGGLSLTLVGCGDKTAEQPVKETKPAEKAVSTDSVYADVQELTRGNGTEVATLDPHKSQGVPESHVIRD
LLEGLVNQDAAGNTIPGVAESWETTDNKKFTFHLRKDAKWSNGDPVTADDFVYSFQRAVDPATASPYSWYMEYTKMANAK
DIVAGKKDKSELGVKAIDANTLEVQLDTAVPYFVMMMGHTTMMPVHKATIEEFGDQWTKPGNFVGNGAFVVNKWVVNERL
ELTRNEQYWDNADTKLTKVTFLPIENQVSEMNRFLSGELDFTNELPVEHFKRLKKEEPESVSVVGSLCTYYYSFNTKKAP
FDDVRVRKAISYAIDRPIISDIILGQGQKPAYFLTPEITAGFNPELPAYGKMTQDERNAEAKRLLVEAGFGPENPLKFTL
LYNTSENHKKIAVAAGSMWKKTLGLEVVLENQEWKTYLDSKDQGQFEVARAGWCGDYNEASAFLTLMVSKNTTGGQHYGS
AEYDALIEKALASTSEEERTAIYLQAEQLLAKDMPIAPIYQYVKSRLLSPQVGGFPVENAEEKIYSKDLYIKAK

Sequences:

>Translated_554_residues
MYKNKITQAILLGGLSLTLVGCGDKTAEQPVKETKPAEKAVSTDSVYADVQELTRGNGTEVATLDPHKSQGVPESHVIRD
LLEGLVNQDAAGNTIPGVAESWETTDNKKFTFHLRKDAKWSNGDPVTADDFVYSFQRAVDPATASPYSWYMEYTKMANAK
DIVAGKKDKSELGVKAIDANTLEVQLDTAVPYFVMMMGHTTMMPVHKATIEEFGDQWTKPGNFVGNGAFVVNKWVVNERL
ELTRNEQYWDNADTKLTKVTFLPIENQVSEMNRFLSGELDFTNELPVEHFKRLKKEEPESVSVVGSLCTYYYSFNTKKAP
FDDVRVRKAISYAIDRPIISDIILGQGQKPAYFLTPEITAGFNPELPAYGKMTQDERNAEAKRLLVEAGFGPENPLKFTL
LYNTSENHKKIAVAAGSMWKKTLGLEVVLENQEWKTYLDSKDQGQFEVARAGWCGDYNEASAFLTLMVSKNTTGGQHYGS
AEYDALIEKALASTSEEERTAIYLQAEQLLAKDMPIAPIYQYVKSRLLSPQVGGFPVENAEEKIYSKDLYIKAK
>Mature_554_residues
MYKNKITQAILLGGLSLTLVGCGDKTAEQPVKETKPAEKAVSTDSVYADVQELTRGNGTEVATLDPHKSQGVPESHVIRD
LLEGLVNQDAAGNTIPGVAESWETTDNKKFTFHLRKDAKWSNGDPVTADDFVYSFQRAVDPATASPYSWYMEYTKMANAK
DIVAGKKDKSELGVKAIDANTLEVQLDTAVPYFVMMMGHTTMMPVHKATIEEFGDQWTKPGNFVGNGAFVVNKWVVNERL
ELTRNEQYWDNADTKLTKVTFLPIENQVSEMNRFLSGELDFTNELPVEHFKRLKKEEPESVSVVGSLCTYYYSFNTKKAP
FDDVRVRKAISYAIDRPIISDIILGQGQKPAYFLTPEITAGFNPELPAYGKMTQDERNAEAKRLLVEAGFGPENPLKFTL
LYNTSENHKKIAVAAGSMWKKTLGLEVVLENQEWKTYLDSKDQGQFEVARAGWCGDYNEASAFLTLMVSKNTTGGQHYGS
AEYDALIEKALASTSEEERTAIYLQAEQLLAKDMPIAPIYQYVKSRLLSPQVGGFPVENAEEKIYSKDLYIKAK

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=505, Percent_Identity=52.0792079207921, Blast_Score=556, Evalue=1e-159,
Organism=Escherichia coli, GI87081878, Length=511, Percent_Identity=49.5107632093933, Blast_Score=536, Evalue=1e-153,
Organism=Escherichia coli, GI1789397, Length=514, Percent_Identity=42.0233463035019, Blast_Score=416, Evalue=1e-117,
Organism=Escherichia coli, GI1787762, Length=463, Percent_Identity=25.7019438444924, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1789966, Length=483, Percent_Identity=25.2587991718427, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI1787052, Length=476, Percent_Identity=23.5294117647059, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI1789887, Length=512, Percent_Identity=25, Blast_Score=104, Evalue=2e-23,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 61851; Mature: 61851

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKNKITQAILLGGLSLTLVGCGDKTAEQPVKETKPAEKAVSTDSVYADVQELTRGNGTE
CCCHHHHHHHHHCCCEEEEEECCCCHHHCCHHHCCCHHHHCCCHHHHHHHHHHHCCCCCE
VATLDPHKSQGVPESHVIRDLLEGLVNQDAAGNTIPGVAESWETTDNKKFTFHLRKDAKW
EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
SNGDPVTADDFVYSFQRAVDPATASPYSWYMEYTKMANAKDIVAGKKDKSELGVKAIDAN
CCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCHHHCCEEEECCC
TLEVQLDTAVPYFVMMMGHTTMMPVHKATIEEFGDQWTKPGNFVGNGAFVVNKWVVNERL
EEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEECCCEEEEEEEHHCCHH
ELTRNEQYWDNADTKLTKVTFLPIENQVSEMNRFLSGELDFTNELPVEHFKRLKKEEPES
HHCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCH
VSVVGSLCTYYYSFNTKKAPFDDVRVRKAISYAIDRPIISDIILGQGQKPAYFLTPEITA
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCC
GFNPELPAYGKMTQDERNAEAKRLLVEAGFGPENPLKFTLLYNTSENHKKIAVAAGSMWK
CCCCCCCCCCCCCCHHHCHHHHEEEEECCCCCCCCEEEEEEEECCCCCCEEEEECCHHHH
KTLGLEVVLENQEWKTYLDSKDQGQFEVARAGWCGDYNEASAFLTLMVSKNTTGGQHYGS
HHCCEEEEEECCCHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCC
AEYDALIEKALASTSEEERTAIYLQAEQLLAKDMPIAPIYQYVKSRLLSPQVGGFPVENA
HHHHHHHHHHHHCCCCCHHEEEEEEHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCH
EEKIYSKDLYIKAK
HHHHHCCCEEEEEC
>Mature Secondary Structure
MYKNKITQAILLGGLSLTLVGCGDKTAEQPVKETKPAEKAVSTDSVYADVQELTRGNGTE
CCCHHHHHHHHHCCCEEEEEECCCCHHHCCHHHCCCHHHHCCCHHHHHHHHHHHCCCCCE
VATLDPHKSQGVPESHVIRDLLEGLVNQDAAGNTIPGVAESWETTDNKKFTFHLRKDAKW
EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
SNGDPVTADDFVYSFQRAVDPATASPYSWYMEYTKMANAKDIVAGKKDKSELGVKAIDAN
CCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCHHHCCEEEECCC
TLEVQLDTAVPYFVMMMGHTTMMPVHKATIEEFGDQWTKPGNFVGNGAFVVNKWVVNERL
EEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEECCCEEEEEEEHHCCHH
ELTRNEQYWDNADTKLTKVTFLPIENQVSEMNRFLSGELDFTNELPVEHFKRLKKEEPES
HHCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCH
VSVVGSLCTYYYSFNTKKAPFDDVRVRKAISYAIDRPIISDIILGQGQKPAYFLTPEITA
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCC
GFNPELPAYGKMTQDERNAEAKRLLVEAGFGPENPLKFTLLYNTSENHKKIAVAAGSMWK
CCCCCCCCCCCCCCHHHCHHHHEEEEECCCCCCCCEEEEEEEECCCCCCEEEEECCHHHH
KTLGLEVVLENQEWKTYLDSKDQGQFEVARAGWCGDYNEASAFLTLMVSKNTTGGQHYGS
HHCCEEEEEECCCHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCC
AEYDALIEKALASTSEEERTAIYLQAEQLLAKDMPIAPIYQYVKSRLLSPQVGGFPVENA
HHHHHHHHHHHHCCCCCHHEEEEEEHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCH
EEKIYSKDLYIKAK
HHHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2821267; 3525163; 11677609; 8202710; 8747465; 10422831; 10438628 [H]