Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695385

Identifier: 209695385

GI number: 209695385

Start: 2052717

End: 2053427

Strand: Direct

Name: 209695385

Synonym: VSAL_I1919

Alternate gene names: NA

Gene position: 2052717-2053427 (Clockwise)

Preceding gene: 209695381

Following gene: 209695391

Centisome position: 61.73

GC content: 36.15

Gene sequence:

>711_bases
TTGCTATTGTCATTTGAGAGGCAGAATATTGGAGCTTGTAAATTACGTCATATTCCTATCAACCGTATTAGAGGTAGCCT
TTTGAATCACATTATCCGCCAGATCTTTGAACCTAAAAAAATAATGCTTTATTTTGTTTTTGCATTTATTCCTGCAATCT
TATTTTATGCACTTTCACTTGTTGGATTGCATCAGGCACTTGGATTTACACCAATGCAGGTCTTGCGTGATTTAGCGCAA
CAAACAGAAGTACATAGCTTTTTAGGTTTTCTTTCTAATATTGGAGTCTGGTTTTGGATTTCCTCACTCGCGGTTGCTTA
TTTCAGTGCTATTTATCTACACAGTGGCAAACACAGAAGGTTGTTGATATTAATGGGAATGCTGGCATCTATCTTAGCGG
TAGATGATTTCTTCTTGATTCATGATCGTTATGTAAATCAATATATCTGTTATTTCTTTTATGTGGTGGTGGCATTAGCG
CTATTGGCTTTTCATTTTAAAGATATTGTTGAAATCGATGGATTTGCATTTTTAGTTGCTGGAGGATTACTTGCGGGTTC
TATCGCTACAGATGTCATTCAAGGGTATTTGCCGTTTGGTTATGAAGTGACTCAAGTATTTGAAGAAGGCTGTAAATTTA
TTGGTGCAGCTTCATGGTTATATTTTACTTGTACTGCTGCATCTTATGGTTGCAAGAGAGTAGAGAAGTAA

Upstream 100 bases:

>100_bases
GTTATGTTTTTATTATGTATTAATAAATTTAATCTAAATTATCAAGACGTAAAGATAACCTCTATTTTAATTTGGTCTTA
ATTTTAAGAGGGCAGCGGCG

Downstream 100 bases:

>100_bases
TTGGTAAAGGGGCACTATTTATTATTTAAATAGTGCCCCATTTATTTATCGAGAACGTCGTTTTTCTAATTGTTGGTTGA
CGATTAAAGCGATGAGAATT

Product: membrane protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MLLSFERQNIGACKLRHIPINRIRGSLLNHIIRQIFEPKKIMLYFVFAFIPAILFYALSLVGLHQALGFTPMQVLRDLAQ
QTEVHSFLGFLSNIGVWFWISSLAVAYFSAIYLHSGKHRRLLILMGMLASILAVDDFFLIHDRYVNQYICYFFYVVVALA
LLAFHFKDIVEIDGFAFLVAGGLLAGSIATDVIQGYLPFGYEVTQVFEEGCKFIGAASWLYFTCTAASYGCKRVEK

Sequences:

>Translated_236_residues
MLLSFERQNIGACKLRHIPINRIRGSLLNHIIRQIFEPKKIMLYFVFAFIPAILFYALSLVGLHQALGFTPMQVLRDLAQ
QTEVHSFLGFLSNIGVWFWISSLAVAYFSAIYLHSGKHRRLLILMGMLASILAVDDFFLIHDRYVNQYICYFFYVVVALA
LLAFHFKDIVEIDGFAFLVAGGLLAGSIATDVIQGYLPFGYEVTQVFEEGCKFIGAASWLYFTCTAASYGCKRVEK
>Mature_236_residues
MLLSFERQNIGACKLRHIPINRIRGSLLNHIIRQIFEPKKIMLYFVFAFIPAILFYALSLVGLHQALGFTPMQVLRDLAQ
QTEVHSFLGFLSNIGVWFWISSLAVAYFSAIYLHSGKHRRLLILMGMLASILAVDDFFLIHDRYVNQYICYFFYVVVALA
LLAFHFKDIVEIDGFAFLVAGGLLAGSIATDVIQGYLPFGYEVTQVFEEGCKFIGAASWLYFTCTAASYGCKRVEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26779; Mature: 26779

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLSFERQNIGACKLRHIPINRIRGSLLNHIIRQIFEPKKIMLYFVFAFIPAILFYALSL
CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
VGLHQALGFTPMQVLRDLAQQTEVHSFLGFLSNIGVWFWISSLAVAYFSAIYLHSGKHRR
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
LLILMGMLASILAVDDFFLIHDRYVNQYICYFFYVVVALALLAFHFKDIVEIDGFAFLVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
GGLLAGSIATDVIQGYLPFGYEVTQVFEEGCKFIGAASWLYFTCTAASYGCKRVEK
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLLSFERQNIGACKLRHIPINRIRGSLLNHIIRQIFEPKKIMLYFVFAFIPAILFYALSL
CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
VGLHQALGFTPMQVLRDLAQQTEVHSFLGFLSNIGVWFWISSLAVAYFSAIYLHSGKHRR
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
LLILMGMLASILAVDDFFLIHDRYVNQYICYFFYVVVALALLAFHFKDIVEIDGFAFLVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
GGLLAGSIATDVIQGYLPFGYEVTQVFEEGCKFIGAASWLYFTCTAASYGCKRVEK
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA