| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695275
Identifier: 209695275
GI number: 209695275
Start: 1922402
End: 1923886
Strand: Direct
Name: 209695275
Synonym: VSAL_I1800
Alternate gene names: NA
Gene position: 1922402-1923886 (Clockwise)
Preceding gene: 209695274
Following gene: 209695276
Centisome position: 57.81
GC content: 42.56
Gene sequence:
>1485_bases ATGAGCCATTATCAGAAACTCGTTCAACATCATTTGAAAATTTCTCGCTTTGAACACCTCTCCGCTATTTGTGGTTGGGA TCAAGCCGCCGTTATGCCATCGGGCGGTAATGAAGCACGATCAGAAGCGATGGCAGAGCTGTCTGTTCACCTACATCAAC TTGGTAATGCCCCACAATTAGCTGAATGGTTTACTAACGCAGAATCAGAATCTCTTTCTGAACATGAACTCGCTAGTCTG CGTGAAATGAAATCTCAATGGCAACAAACCACAGCATTACCAGAGAAACTGGTTCAAGCACAATCCCTTGCAGGATCTAA ATGTGAGCATGCATGGCGAACACAGCGTGGAGAAAATGACTGGGCAGGATTCAGTAAAAACTTTGCCAAAGTTGTCGCAC TTTCTCAAGAAGAAGCACAAATTCGAGCCGAAATTTCAGGATTAACACCTTACGATGCCATGCTTGATTTGTATGAACCG GGCACAACTACGGCAAAATTAGACATCGTCTTTGATAATGTAAAAACATGCCTTCCGACTCTTATTCAACAAATCCAAGA GAAACAAGCAACTGAATCTATTTATCTTCCAAAAGGCCACTACCCTACAGAGCAACAACGCCAATTAAGTTTAGACGTAA TGAAGTTGCTTAAATTCGATTTCGATCATGGCCGCTTAGATGTCAGCATGCACCCTTTTTGTGGTGGTGTTCCAACAGAC GTTCGTATTACCACACGTTATGATGAAAATGATTTTGTTCAATCCTTAATGGGCACCGTTCATGAAACGGGTCACGCTCG TTATGAACAAGGCTTACCAAAAACGTTTGCAGGGCTGCCTGTTGGCCAAGCTCGCTCTATGGGTATTCATGAGTCTCAGA GCTTGTTCTTTGAAATGCAATTAGGTCGTAGCCAAGAGTTTATCTCTCAACTGTCTCCGTTAGTAACTAAGAACTTTAGC AATGCTGACCAAGCCATCTTTGAACCGACTAACCTACAAGCCATTTACTCGCGCGTAAACCCTGATTTCATCCGTGTTGA TGCTGATGAGGCAACTTATCCTGCTCACGTTATTCTTCGTTATGAAATTGAGCGAGATTTGATGAACGGTAAAATCAGTT ATAAAGACATCCCTGAGTTGTGGGATACAAAGATGCAGCAGTACTTAGGCTTATCAACTAAAGACAATTACAAAAACGGT TGTATGCAAGACATTCACTGGACAGACGGAAGTTTCGGATACTTCCCAAGCTACACTCTCGGCGCAATGTACGCAGCCCA ATTTATGGCAGCAATGAAGCAAACCGTAGATGTAGAGAAAGCCACATTAAGCGGCGATTTAAACCCTATCTTCACTTGGC TATCAGACAATATCTGGAGCAAAGCATCGCTACTCTCAACCGATGAATTAGTGAAACAAGCGACAGGTGATGTGCTGAAT GCTAATTTCTTTAAAGATCATTTAGAGAAGCGTTATTTAGGGTAA
Upstream 100 bases:
>100_bases GCAAGCCTCATCATAATGACGAGGCTTTTTTATTTGAAAAATAACCAACTAGGGAGTTACAATTTAACGATATTACTAAT AATAAAAATAGGGACACCTC
Downstream 100 bases:
>100_bases GAGCGAGAAGCTTATTTTTAATTTTGAGTAATTAAGAGAATGGATGCAGTTATTGGCTGCATCCATTTTTTGTATTTGAA TCACCATTTTATCCCCGACA
Product: carboxypeptidase
Products: NA
Alternate protein names: Carboxypeptidase Taq [H]
Number of amino acids: Translated: 494; Mature: 493
Protein sequence:
>494_residues MSHYQKLVQHHLKISRFEHLSAICGWDQAAVMPSGGNEARSEAMAELSVHLHQLGNAPQLAEWFTNAESESLSEHELASL REMKSQWQQTTALPEKLVQAQSLAGSKCEHAWRTQRGENDWAGFSKNFAKVVALSQEEAQIRAEISGLTPYDAMLDLYEP GTTTAKLDIVFDNVKTCLPTLIQQIQEKQATESIYLPKGHYPTEQQRQLSLDVMKLLKFDFDHGRLDVSMHPFCGGVPTD VRITTRYDENDFVQSLMGTVHETGHARYEQGLPKTFAGLPVGQARSMGIHESQSLFFEMQLGRSQEFISQLSPLVTKNFS NADQAIFEPTNLQAIYSRVNPDFIRVDADEATYPAHVILRYEIERDLMNGKISYKDIPELWDTKMQQYLGLSTKDNYKNG CMQDIHWTDGSFGYFPSYTLGAMYAAQFMAAMKQTVDVEKATLSGDLNPIFTWLSDNIWSKASLLSTDELVKQATGDVLN ANFFKDHLEKRYLG
Sequences:
>Translated_494_residues MSHYQKLVQHHLKISRFEHLSAICGWDQAAVMPSGGNEARSEAMAELSVHLHQLGNAPQLAEWFTNAESESLSEHELASL REMKSQWQQTTALPEKLVQAQSLAGSKCEHAWRTQRGENDWAGFSKNFAKVVALSQEEAQIRAEISGLTPYDAMLDLYEP GTTTAKLDIVFDNVKTCLPTLIQQIQEKQATESIYLPKGHYPTEQQRQLSLDVMKLLKFDFDHGRLDVSMHPFCGGVPTD VRITTRYDENDFVQSLMGTVHETGHARYEQGLPKTFAGLPVGQARSMGIHESQSLFFEMQLGRSQEFISQLSPLVTKNFS NADQAIFEPTNLQAIYSRVNPDFIRVDADEATYPAHVILRYEIERDLMNGKISYKDIPELWDTKMQQYLGLSTKDNYKNG CMQDIHWTDGSFGYFPSYTLGAMYAAQFMAAMKQTVDVEKATLSGDLNPIFTWLSDNIWSKASLLSTDELVKQATGDVLN ANFFKDHLEKRYLG >Mature_493_residues SHYQKLVQHHLKISRFEHLSAICGWDQAAVMPSGGNEARSEAMAELSVHLHQLGNAPQLAEWFTNAESESLSEHELASLR EMKSQWQQTTALPEKLVQAQSLAGSKCEHAWRTQRGENDWAGFSKNFAKVVALSQEEAQIRAEISGLTPYDAMLDLYEPG TTTAKLDIVFDNVKTCLPTLIQQIQEKQATESIYLPKGHYPTEQQRQLSLDVMKLLKFDFDHGRLDVSMHPFCGGVPTDV RITTRYDENDFVQSLMGTVHETGHARYEQGLPKTFAGLPVGQARSMGIHESQSLFFEMQLGRSQEFISQLSPLVTKNFSN ADQAIFEPTNLQAIYSRVNPDFIRVDADEATYPAHVILRYEIERDLMNGKISYKDIPELWDTKMQQYLGLSTKDNYKNGC MQDIHWTDGSFGYFPSYTLGAMYAAQFMAAMKQTVDVEKATLSGDLNPIFTWLSDNIWSKASLLSTDELVKQATGDVLNA NFFKDHLEKRYLG
Specific function: Releases amino acids sequentially from the C-terminus with a broad substrate specificity (except for proline) [H]
COG id: COG2317
COG function: function code E; Zn-dependent carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M32 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001333 [H]
Pfam domain/function: PF02074 Peptidase_M32 [H]
EC number: =3.4.17.19 [H]
Molecular weight: Translated: 55862; Mature: 55730
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHYQKLVQHHLKISRFEHLSAICGWDQAAVMPSGGNEARSEAMAELSVHLHQLGNAPQL CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCHH AEWFTNAESESLSEHELASLREMKSQWQQTTALPEKLVQAQSLAGSKCEHAWRTQRGEND HHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC WAGFSKNFAKVVALSQEEAQIRAEISGLTPYDAMLDLYEPGTTTAKLDIVFDNVKTCLPT CCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHH LIQQIQEKQATESIYLPKGHYPTEQQRQLSLDVMKLLKFDFDHGRLDVSMHPFCGGVPTD HHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC VRITTRYDENDFVQSLMGTVHETGHARYEQGLPKTFAGLPVGQARSMGIHESQSLFFEMQ EEEEEECCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHCCCCCCHHCCCCCCCHHEEEEEC LGRSQEFISQLSPLVTKNFSNADQAIFEPTNLQAIYSRVNPDFIRVDADEATYPAHVILR CCCCHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHCCCCEEEEECCCCCCCEEEEEE YEIERDLMNGKISYKDIPELWDTKMQQYLGLSTKDNYKNGCMQDIHWTDGSFGYFPSYTL EEHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH GAMYAAQFMAAMKQTVDVEKATLSGDLNPIFTWLSDNIWSKASLLSTDELVKQATGDVLN HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHH ANFFKDHLEKRYLG HHHHHHHHHHHCCC >Mature Secondary Structure SHYQKLVQHHLKISRFEHLSAICGWDQAAVMPSGGNEARSEAMAELSVHLHQLGNAPQL CHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCHH AEWFTNAESESLSEHELASLREMKSQWQQTTALPEKLVQAQSLAGSKCEHAWRTQRGEND HHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC WAGFSKNFAKVVALSQEEAQIRAEISGLTPYDAMLDLYEPGTTTAKLDIVFDNVKTCLPT CCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHH LIQQIQEKQATESIYLPKGHYPTEQQRQLSLDVMKLLKFDFDHGRLDVSMHPFCGGVPTD HHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC VRITTRYDENDFVQSLMGTVHETGHARYEQGLPKTFAGLPVGQARSMGIHESQSLFFEMQ EEEEEECCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHCCCCCCHHCCCCCCCHHEEEEEC LGRSQEFISQLSPLVTKNFSNADQAIFEPTNLQAIYSRVNPDFIRVDADEATYPAHVILR CCCCHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHCCCCEEEEECCCCCCCEEEEEE YEIERDLMNGKISYKDIPELWDTKMQQYLGLSTKDNYKNGCMQDIHWTDGSFGYFPSYTL EEHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH GAMYAAQFMAAMKQTVDVEKATLSGDLNPIFTWLSDNIWSKASLLSTDELVKQATGDVLN HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHH ANFFKDHLEKRYLG HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7765282; 1369078 [H]