Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695253

Identifier: 209695253

GI number: 209695253

Start: 1892637

End: 1893551

Strand: Direct

Name: 209695253

Synonym: VSAL_I1775

Alternate gene names: NA

Gene position: 1892637-1893551 (Clockwise)

Preceding gene: 209695252

Following gene: 209695256

Centisome position: 56.92

GC content: 40.77

Gene sequence:

>915_bases
GTGAAAAAACAAGCAATAGCCAGTTTGCTTTTAGGGTGCACTGCGTCAACACAAGCATTTGCACTTGATACTAACAGCGC
TTATGACATCGATTATAAAAGTGATTGTTCTAGCAACATTTATTCAAGCTATTGCTCTGCGGCTTCATTTGATTTCTCCC
CTGTACGGTTAGCGGGTGATGTGACGCCATCAAAAAAAGCGGATAATAACGATTTCGCGACAGAACAAGTCCCCCATTAT
CTACGCGTATCTGATCAACGAGATTGGGATTACTTACTCGCGCAATCCTATACAATCCTTGGCTTAAGTGTTGCCACTGT
TGGTTTAATGACATTTCTACCAGAAAGTATCACTAAATGGGATTCTGAAGATTCAAGTCTTAAAGGTCTTGGCTCTAAAT
GGAAAGATAATGTCACAGCGGGTCCTGTTTGGGATAAAGATGAGCATTTCTTAAACTATGTAATGCACCCTTATTTTGGT
GGTGTGTACTATACCGCAGCTCGACATGCCGGTTTTAATGAATTTGAATCGTTCCTATACTCAACAACGATGTCTACTTT
TTTCTGGGAATATGGTGTAGAAGCATTTGCTGAAGTCCCATCAATTCAAGATTTATTTGTAACGCCTTTCTTTGGTGCCG
TTGTTGGTGAGCTAATGCTGCAACAAGAGCTTAGTATCACGGCAAATGGTGGCGAAGTATTAGGATCAGACACATTAGGT
AGCGTCAGCTTATTCTTCTTAAACCCAGTGGGTCATATTCATTATTGGGTAACCGATGCATGGGGTGGAGATACTGAAGT
TAACCTTGCTTATAATGCTTGGTTTAGTAATGGTGATGCGGCACAATTTGCTTATGATGCAGGCATGCCTTACACCGACC
AATTTGTCGGCCTTGAAGTTAAATTAAAATTCTAA

Upstream 100 bases:

>100_bases
ACTCGTTTTTATGAGTGTTTTTACTTTTATGTTTTGCATTTTATCTCTAATAGTAGATAATTGTGACCTAGCTCGTATTT
AATATAGTTAAGGACTTTCA

Downstream 100 bases:

>100_bases
GCGTATAGACACTAAAAAAAAGACATCCTAAGCGGTAATGCCGTTCACTTAAGGGTGAATGGCATTCTTGTTTCTGGCAT
ATCGTTGAGGTCTTGGTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MKKQAIASLLLGCTASTQAFALDTNSAYDIDYKSDCSSNIYSSYCSAASFDFSPVRLAGDVTPSKKADNNDFATEQVPHY
LRVSDQRDWDYLLAQSYTILGLSVATVGLMTFLPESITKWDSEDSSLKGLGSKWKDNVTAGPVWDKDEHFLNYVMHPYFG
GVYYTAARHAGFNEFESFLYSTTMSTFFWEYGVEAFAEVPSIQDLFVTPFFGAVVGELMLQQELSITANGGEVLGSDTLG
SVSLFFLNPVGHIHYWVTDAWGGDTEVNLAYNAWFSNGDAAQFAYDAGMPYTDQFVGLEVKLKF

Sequences:

>Translated_304_residues
MKKQAIASLLLGCTASTQAFALDTNSAYDIDYKSDCSSNIYSSYCSAASFDFSPVRLAGDVTPSKKADNNDFATEQVPHY
LRVSDQRDWDYLLAQSYTILGLSVATVGLMTFLPESITKWDSEDSSLKGLGSKWKDNVTAGPVWDKDEHFLNYVMHPYFG
GVYYTAARHAGFNEFESFLYSTTMSTFFWEYGVEAFAEVPSIQDLFVTPFFGAVVGELMLQQELSITANGGEVLGSDTLG
SVSLFFLNPVGHIHYWVTDAWGGDTEVNLAYNAWFSNGDAAQFAYDAGMPYTDQFVGLEVKLKF
>Mature_304_residues
MKKQAIASLLLGCTASTQAFALDTNSAYDIDYKSDCSSNIYSSYCSAASFDFSPVRLAGDVTPSKKADNNDFATEQVPHY
LRVSDQRDWDYLLAQSYTILGLSVATVGLMTFLPESITKWDSEDSSLKGLGSKWKDNVTAGPVWDKDEHFLNYVMHPYFG
GVYYTAARHAGFNEFESFLYSTTMSTFFWEYGVEAFAEVPSIQDLFVTPFFGAVVGELMLQQELSITANGGEVLGSDTLG
SVSLFFLNPVGHIHYWVTDAWGGDTEVNLAYNAWFSNGDAAQFAYDAGMPYTDQFVGLEVKLKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33670; Mature: 33670

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQAIASLLLGCTASTQAFALDTNSAYDIDYKSDCSSNIYSSYCSAASFDFSPVRLAGD
CCHHHHHHHHHHCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEECC
VTPSKKADNNDFATEQVPHYLRVSDQRDWDYLLAQSYTILGLSVATVGLMTFLPESITKW
CCCCCCCCCCCCCHHHCCCEEEECCCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHC
DSEDSSLKGLGSKWKDNVTAGPVWDKDEHFLNYVMHPYFGGVYYTAARHAGFNEFESFLY
CCCCCHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHCCHHHHHHHHH
STTMSTFFWEYGVEAFAEVPSIQDLFVTPFFGAVVGELMLQQELSITANGGEVLGSDTLG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCEEEECCCEEECCCCCC
SVSLFFLNPVGHIHYWVTDAWGGDTEVNLAYNAWFSNGDAAQFAYDAGMPYTDQFVGLEV
CEEEEEECCCCEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCEEEEEE
KLKF
EEEC
>Mature Secondary Structure
MKKQAIASLLLGCTASTQAFALDTNSAYDIDYKSDCSSNIYSSYCSAASFDFSPVRLAGD
CCHHHHHHHHHHCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEECC
VTPSKKADNNDFATEQVPHYLRVSDQRDWDYLLAQSYTILGLSVATVGLMTFLPESITKW
CCCCCCCCCCCCCHHHCCCEEEECCCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHC
DSEDSSLKGLGSKWKDNVTAGPVWDKDEHFLNYVMHPYFGGVYYTAARHAGFNEFESFLY
CCCCCHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHCCHHHHHHHHH
STTMSTFFWEYGVEAFAEVPSIQDLFVTPFFGAVVGELMLQQELSITANGGEVLGSDTLG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCEEEECCCEEECCCCCC
SVSLFFLNPVGHIHYWVTDAWGGDTEVNLAYNAWFSNGDAAQFAYDAGMPYTDQFVGLEV
CEEEEEECCCCEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCEEEEEE
KLKF
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA