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The map label for this gene is exbD1 [H]

Identifier: 209695232

GI number: 209695232

Start: 1867137

End: 1867562

Strand: Direct

Name: exbD1 [H]

Synonym: VSAL_I1753

Alternate gene names: 209695232

Gene position: 1867137-1867562 (Clockwise)

Preceding gene: 209695231

Following gene: 209695233

Centisome position: 56.15

GC content: 32.63

Gene sequence:

>426_bases
ATGATTCAATCCAATAGACAAGAAGAGTTAGATAATCTTCAACCTGACCTCACACCATTACTCGATATCATTTTTATTGT
CATGGTATTTTTATTATTAACCGCAACAGTAAAATTACAATCATTAGAAGTCAGCTTACCTTCTGCAGAAAGTGAATCTA
TCTCTAGTGTTGATAGTAAGTCTTTTACTATCAACATATTAGAAAAGCCACCTTATTGGGGGCTTGATGGTACACCTTAT
CCTTCTTGGGAGAATTTCACTCAAGCCCTGTTAAATAAAGTAACTCAAAAACCAGATTTTCAAGTTGTTATTGCTTCAGA
TAAAACGGCGGAAATACAACATATGATTAAGTTACTCGCCTTTTTACAAGACAATAAAATTAAAGCGACTCAAATTTTAA
TGGATGAAAAAACACATGCAAACTAA

Upstream 100 bases:

>100_bases
AGTATTCATTAAATGTCACAAATCTGTGGATTGAGGGGGTGGCACCCATGAAAAATAAAAATGAACAAGAGGCATCATTA
CGTTCAATAGAGGCTATCTA

Downstream 100 bases:

>100_bases
ACCTTATACCTCATTGCTAGCAAGTAAAAATCTCTTCGCAATCGGTCTGTTATTTGTCTCTTCTTATTCGATGGCACAAG
AACGCATTATTAGTGCAGGA

Product: TonB system transport protein ExbD1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MIQSNRQEELDNLQPDLTPLLDIIFIVMVFLLLTATVKLQSLEVSLPSAESESISSVDSKSFTINILEKPPYWGLDGTPY
PSWENFTQALLNKVTQKPDFQVVIASDKTAEIQHMIKLLAFLQDNKIKATQILMDEKTHAN

Sequences:

>Translated_141_residues
MIQSNRQEELDNLQPDLTPLLDIIFIVMVFLLLTATVKLQSLEVSLPSAESESISSVDSKSFTINILEKPPYWGLDGTPY
PSWENFTQALLNKVTQKPDFQVVIASDKTAEIQHMIKLLAFLQDNKIKATQILMDEKTHAN
>Mature_141_residues
MIQSNRQEELDNLQPDLTPLLDIIFIVMVFLLLTATVKLQSLEVSLPSAESESISSVDSKSFTINILEKPPYWGLDGTPY
PSWENFTQALLNKVTQKPDFQVVIASDKTAEIQHMIKLLAFLQDNKIKATQILMDEKTHAN

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15932; Mature: 15932

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQSNRQEELDNLQPDLTPLLDIIFIVMVFLLLTATVKLQSLEVSLPSAESESISSVDSK
CCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHCCCC
SFTINILEKPPYWGLDGTPYPSWENFTQALLNKVTQKPDFQVVIASDKTAEIQHMIKLLA
CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHH
FLQDNKIKATQILMDEKTHAN
HHHCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MIQSNRQEELDNLQPDLTPLLDIIFIVMVFLLLTATVKLQSLEVSLPSAESESISSVDSK
CCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHCCCC
SFTINILEKPPYWGLDGTPYPSWENFTQALLNKVTQKPDFQVVIASDKTAEIQHMIKLLA
CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHH
FLQDNKIKATQILMDEKTHAN
HHHCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9781885; 10952301 [H]