Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695210
Identifier: 209695210
GI number: 209695210
Start: 1835774
End: 1837129
Strand: Direct
Name: 209695210
Synonym: VSAL_I1725
Alternate gene names: NA
Gene position: 1835774-1837129 (Clockwise)
Preceding gene: 209695206
Following gene: 209695212
Centisome position: 55.21
GC content: 36.65
Gene sequence:
>1356_bases GTGATTACAGTTGGTAAGAAAGATGGCTTATCACTAAAAATATCCCACATCGTTGAAGAATCTAAGCAGCATGAGCTTGA GATGTATCTTTTTATTCCTGGAGAGTTAGGTTTAAACAAAGACATGGTTTCTGAATCTGAATTTTATTTCAGCTCAATTC AAAGCCAGCGTACCTATTTCAGTGATAAAAACCATCTTCCCCTTGTCCACTCTCGCTTAGCTCAACGTGGACGTTTATCA ACTGAACAATATCGTTTAAGTTTGAGTTTGTATGCTTATCAATATGCACTTGCCTTAGAAAAAGCCGTACAGCAACTGAA TGAAACTTCCCGTGAAAACATTACGCATAAAGAAGTGGATGATGCGATCGATCTCGCCATCGATATTCTTAGAAAGTTAC GACGTAACGTACCTTATGAAGATAATTTAAAACGTTACTATGCCAATATCGATAATTATTTATCTTGGTACACTGAGCAA CGTTTTCTTTCATTACTTGCTCATATGCCAAGAAATGAAGAATATAAACTTGTAAAAGAACGCTTAATTGATATCTGTGA AAAAGAAGTATTACACCGTTTAGATAAGAGCTATAACTCACGAAAAGCACGTGATGACATTACTCGAATGTCGAATAAAA TGCGTTTATTACGTCGTTTAATCGAGTTCCCTATTGTATTAAAAGAGAAAAACTTTGCACTAGGTAAGCATATTAAACGA ATGGTGAAAGGCGGCGCAACCGCTGTTGTTATGATTTTTGTTTCATTGATGGTGATTCAAGCGCGCGGTTTCTTAGGTGA AATTACCGCCTCCTTTATTTTTGCGATCTCTTTTATCTACGCGATGCGTGAAGTATTTAAAGATGACTTACGTGATGTAA TGTGGCGCTGGATACGTAAAGGCCAACCAAAATGGCGTAAACGTTATTTTGATCCTACAACCAACAGTTACGTTGGTAGA AAATTAGAATGGCTAGATTACATGACATTTGTCGAGCTCGATTCTGAAATTCAAAAACTGCGTAAACATCGAGTAGTTCA ACGTGAAGAAGTGGTTTTAAGCTATAAAAGCCAAACAAAGATGGCAATCACTAAATTTATGACTGGGTATGAACAAACCC GTGAAACCATGCTCATTGATCTTCGCCCTATTGCACGTTTAATGGAAAAAGGGTCTGAAAAGATCTATCAGTTAAATGAA GGGCAAGTCAGTAAAGAATCGGTTGAAAAACGTCATCTAATTAACTTAATCATTCGAGAAACGATGGATGACTACAGTAC TCAACTTCACCGTTGGAAGATTGTCGTTAACCGCTCTAAAATTGTCGATATCGAAAAAATATCAGATAACAACTAA
Upstream 100 bases:
>100_bases ATTTTAATCATTACTTCAATTCCTAAATAAAATACTCGGCGATTATACCCGAACTCTGATATGCTTGCTGTATGAATTAC CATTTTTATAGGAATTTCCT
Downstream 100 bases:
>100_bases ATAGCTTCATCTCTGAATGAGTTCGTTGTTATTTATTAAAAAGAACCTGAAATTAAAAAGCCTCCACTCATTGTTTTTTG AGTTGGAGGCTTTTTACTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 451; Mature: 451
Protein sequence:
>451_residues MITVGKKDGLSLKISHIVEESKQHELEMYLFIPGELGLNKDMVSESEFYFSSIQSQRTYFSDKNHLPLVHSRLAQRGRLS TEQYRLSLSLYAYQYALALEKAVQQLNETSRENITHKEVDDAIDLAIDILRKLRRNVPYEDNLKRYYANIDNYLSWYTEQ RFLSLLAHMPRNEEYKLVKERLIDICEKEVLHRLDKSYNSRKARDDITRMSNKMRLLRRLIEFPIVLKEKNFALGKHIKR MVKGGATAVVMIFVSLMVIQARGFLGEITASFIFAISFIYAMREVFKDDLRDVMWRWIRKGQPKWRKRYFDPTTNSYVGR KLEWLDYMTFVELDSEIQKLRKHRVVQREEVVLSYKSQTKMAITKFMTGYEQTRETMLIDLRPIARLMEKGSEKIYQLNE GQVSKESVEKRHLINLIIRETMDDYSTQLHRWKIVVNRSKIVDIEKISDNN
Sequences:
>Translated_451_residues MITVGKKDGLSLKISHIVEESKQHELEMYLFIPGELGLNKDMVSESEFYFSSIQSQRTYFSDKNHLPLVHSRLAQRGRLS TEQYRLSLSLYAYQYALALEKAVQQLNETSRENITHKEVDDAIDLAIDILRKLRRNVPYEDNLKRYYANIDNYLSWYTEQ RFLSLLAHMPRNEEYKLVKERLIDICEKEVLHRLDKSYNSRKARDDITRMSNKMRLLRRLIEFPIVLKEKNFALGKHIKR MVKGGATAVVMIFVSLMVIQARGFLGEITASFIFAISFIYAMREVFKDDLRDVMWRWIRKGQPKWRKRYFDPTTNSYVGR KLEWLDYMTFVELDSEIQKLRKHRVVQREEVVLSYKSQTKMAITKFMTGYEQTRETMLIDLRPIARLMEKGSEKIYQLNE GQVSKESVEKRHLINLIIRETMDDYSTQLHRWKIVVNRSKIVDIEKISDNN >Mature_451_residues MITVGKKDGLSLKISHIVEESKQHELEMYLFIPGELGLNKDMVSESEFYFSSIQSQRTYFSDKNHLPLVHSRLAQRGRLS TEQYRLSLSLYAYQYALALEKAVQQLNETSRENITHKEVDDAIDLAIDILRKLRRNVPYEDNLKRYYANIDNYLSWYTEQ RFLSLLAHMPRNEEYKLVKERLIDICEKEVLHRLDKSYNSRKARDDITRMSNKMRLLRRLIEFPIVLKEKNFALGKHIKR MVKGGATAVVMIFVSLMVIQARGFLGEITASFIFAISFIYAMREVFKDDLRDVMWRWIRKGQPKWRKRYFDPTTNSYVGR KLEWLDYMTFVELDSEIQKLRKHRVVQREEVVLSYKSQTKMAITKFMTGYEQTRETMLIDLRPIARLMEKGSEKIYQLNE GQVSKESVEKRHLINLIIRETMDDYSTQLHRWKIVVNRSKIVDIEKISDNN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53643; Mature: 53643
Theoretical pI: Translated: 9.96; Mature: 9.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITVGKKDGLSLKISHIVEESKQHELEMYLFIPGELGLNKDMVSESEFYFSSIQSQRTYF CCCCCCCCCCEEEHHHHHHHHHCCCEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHC SDKNHLPLVHSRLAQRGRLSTEQYRLSLSLYAYQYALALEKAVQQLNETSRENITHKEVD CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH DAIDLAIDILRKLRRNVPYEDNLKRYYANIDNYLSWYTEQRFLSLLAHMPRNEEYKLVKE HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH RLIDICEKEVLHRLDKSYNSRKARDDITRMSNKMRLLRRLIEFPIVLKEKNFALGKHIKR HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHH MVKGGATAVVMIFVSLMVIQARGFLGEITASFIFAISFIYAMREVFKDDLRDVMWRWIRK HHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GQPKWRKRYFDPTTNSYVGRKLEWLDYMTFVELDSEIQKLRKHRVVQREEVVLSYKSQTK CCCHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MAITKFMTGYEQTRETMLIDLRPIARLMEKGSEKIYQLNEGQVSKESVEKRHLINLIIRE HHHHHHHHHHHHHHHHHEEHHHHHHHHHHCCCHHHEECCCCCCCHHHHHHHHHHHHHHHH TMDDYSTQLHRWKIVVNRSKIVDIEKISDNN HHHHHHHHHHHHHEEEECCCEEEEHHCCCCC >Mature Secondary Structure MITVGKKDGLSLKISHIVEESKQHELEMYLFIPGELGLNKDMVSESEFYFSSIQSQRTYF CCCCCCCCCCEEEHHHHHHHHHCCCEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHC SDKNHLPLVHSRLAQRGRLSTEQYRLSLSLYAYQYALALEKAVQQLNETSRENITHKEVD CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH DAIDLAIDILRKLRRNVPYEDNLKRYYANIDNYLSWYTEQRFLSLLAHMPRNEEYKLVKE HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH RLIDICEKEVLHRLDKSYNSRKARDDITRMSNKMRLLRRLIEFPIVLKEKNFALGKHIKR HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHH MVKGGATAVVMIFVSLMVIQARGFLGEITASFIFAISFIYAMREVFKDDLRDVMWRWIRK HHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GQPKWRKRYFDPTTNSYVGRKLEWLDYMTFVELDSEIQKLRKHRVVQREEVVLSYKSQTK CCCHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MAITKFMTGYEQTRETMLIDLRPIARLMEKGSEKIYQLNEGQVSKESVEKRHLINLIIRE HHHHHHHHHHHHHHHHHEEHHHHHHHHHHCCCHHHEECCCCCCCHHHHHHHHHHHHHHHH TMDDYSTQLHRWKIVVNRSKIVDIEKISDNN HHHHHHHHHHHHHEEEECCCEEEEHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA