Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695206
Identifier: 209695206
GI number: 209695206
Start: 1829028
End: 1830104
Strand: Direct
Name: 209695206
Synonym: VSAL_I1720
Alternate gene names: NA
Gene position: 1829028-1830104 (Clockwise)
Preceding gene: 209695204
Following gene: 209695210
Centisome position: 55.01
GC content: 41.32
Gene sequence:
>1077_bases ATGCTGTCCTGTGGGACAGCGGCTTTTGGCTCTCGCGAATATCATTGTTGCAACCCTGACTGTACCCATATCAAATATAT TCACCAAACCTGTAAATCTCGAGCGTGCAGTAGCTGTGGCATGAAAGCCACAGAGCGATGGATACAAAAGCAACAACATG TCTTCCCTGAATGCGAATATCAACACATCACCTTTACCCTTCCAAACACGCTATGGCCTATCTTTCGTCATAACCGTTTG TTAAATAAATTATTCAAATGTGCTGCAAACATTCTGCTGGGATGGGCAAAAGATAAAGGAATAGATGTCGGTATCTTTTG TGCTCTTCATACTTACGGTCGAAAACTGAATTGGAATACGCACTTACATTTATCGGTCACTCGTGGGGGAATTTGTGAAC GTACCGGTTTATGGAAACCCATTTACTTCCAAATGAAAACGACAGAGCCTTGTTGGAGAGCGGCTATCGTCAGTTTATTG GGTAAGGCTTATGATGAGCTTGATTTATCAAGCGAAGAATGCCCCTATATCCATAATAAAACGGATTGGTCACGCTTTTT AAGCAGTCAATATAATCGTCGTTGGAAGCTTCATTTTGCTAAAAAGACAAATAATGTAAAACCGACGATGAACTATCTTG GTCGGTATTTAAAACGGCCCCCGATTTCAGCGTCACGTTTAAGTCATTACGCCAAAGGCGGAATGATAACGTTTAATTAT TTAGACCATCGAACAGGAACAACAGACAGCCTAACATTATCACCAGAAGAGATGATAAGACGGATAGTAGAGCACTATCC TGATAAACATTTCAAGATGATCCGATACTACGGTTTTTTATCAATGCGTCGTCGTGGAGAAGCTCTGCCTAGAGTTTATG CAGCTTTAGGTATGACAATAGAAGCTGAGCCGAAAATGCCAGGGTATGCCGCAATGTTAAAAGGATATGTAAAAGTAGAT CCGTACGAATGTATTTTATGTGAAAGTCGTCTGGTGTTTACGAATTTCCGAGTCGGAAATTCGGTCAATGATTTAGTCAC CCATGCGATAGTTCAGTCAGAATTGAGGGCAGCATAA
Upstream 100 bases:
>100_bases ACCCCTGAAACAATTATTTAATAGTCAAAATAACTGGCTTAAATTTCTTCATAATAACAAAGCTAACCTAAGAGCGGTCG TGATTGAAAATGTCACAAAG
Downstream 100 bases:
>100_bases TAAGGTTTGTAGGATAAGTGTATCTAAAACTCATGAAATAGGGCTAAAACAGTTATAAAATCCCCGATAATTATATTTTC GATACCTTTTAAAAAAACAG
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 358; Mature: 358
Protein sequence:
>358_residues MLSCGTAAFGSREYHCCNPDCTHIKYIHQTCKSRACSSCGMKATERWIQKQQHVFPECEYQHITFTLPNTLWPIFRHNRL LNKLFKCAANILLGWAKDKGIDVGIFCALHTYGRKLNWNTHLHLSVTRGGICERTGLWKPIYFQMKTTEPCWRAAIVSLL GKAYDELDLSSEECPYIHNKTDWSRFLSSQYNRRWKLHFAKKTNNVKPTMNYLGRYLKRPPISASRLSHYAKGGMITFNY LDHRTGTTDSLTLSPEEMIRRIVEHYPDKHFKMIRYYGFLSMRRRGEALPRVYAALGMTIEAEPKMPGYAAMLKGYVKVD PYECILCESRLVFTNFRVGNSVNDLVTHAIVQSELRAA
Sequences:
>Translated_358_residues MLSCGTAAFGSREYHCCNPDCTHIKYIHQTCKSRACSSCGMKATERWIQKQQHVFPECEYQHITFTLPNTLWPIFRHNRL LNKLFKCAANILLGWAKDKGIDVGIFCALHTYGRKLNWNTHLHLSVTRGGICERTGLWKPIYFQMKTTEPCWRAAIVSLL GKAYDELDLSSEECPYIHNKTDWSRFLSSQYNRRWKLHFAKKTNNVKPTMNYLGRYLKRPPISASRLSHYAKGGMITFNY LDHRTGTTDSLTLSPEEMIRRIVEHYPDKHFKMIRYYGFLSMRRRGEALPRVYAALGMTIEAEPKMPGYAAMLKGYVKVD PYECILCESRLVFTNFRVGNSVNDLVTHAIVQSELRAA >Mature_358_residues MLSCGTAAFGSREYHCCNPDCTHIKYIHQTCKSRACSSCGMKATERWIQKQQHVFPECEYQHITFTLPNTLWPIFRHNRL LNKLFKCAANILLGWAKDKGIDVGIFCALHTYGRKLNWNTHLHLSVTRGGICERTGLWKPIYFQMKTTEPCWRAAIVSLL GKAYDELDLSSEECPYIHNKTDWSRFLSSQYNRRWKLHFAKKTNNVKPTMNYLGRYLKRPPISASRLSHYAKGGMITFNY LDHRTGTTDSLTLSPEEMIRRIVEHYPDKHFKMIRYYGFLSMRRRGEALPRVYAALGMTIEAEPKMPGYAAMLKGYVKVD PYECILCESRLVFTNFRVGNSVNDLVTHAIVQSELRAA
Specific function: Involved in the transposition of the insertion sequence [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 32 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007069 [H]
Pfam domain/function: PF04986 Transposase_32 [H]
EC number: NA
Molecular weight: Translated: 41459; Mature: 41459
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 4.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSCGTAAFGSREYHCCNPDCTHIKYIHQTCKSRACSSCGMKATERWIQKQQHVFPECEY CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC QHITFTLPNTLWPIFRHNRLLNKLFKCAANILLGWAKDKGIDVGIFCALHTYGRKLNWNT EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEEHHCCCEECCCE HLHLSVTRGGICERTGLWKPIYFQMKTTEPCWRAAIVSLLGKAYDELDLSSEECPYIHNK EEEEEEECCCCCHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC TDWSRFLSSQYNRRWKLHFAKKTNNVKPTMNYLGRYLKRPPISASRLSHYAKGGMITFNY CHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEEE LDHRTGTTDSLTLSPEEMIRRIVEHYPDKHFKMIRYYGFLSMRRRGEALPRVYAALGMTI ECCCCCCCCEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCEE EAEPKMPGYAAMLKGYVKVDPYECILCESRLVFTNFRVGNSVNDLVTHAIVQSELRAA EECCCCCCHHHHHCCCEEECCCEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLSCGTAAFGSREYHCCNPDCTHIKYIHQTCKSRACSSCGMKATERWIQKQQHVFPECEY CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC QHITFTLPNTLWPIFRHNRLLNKLFKCAANILLGWAKDKGIDVGIFCALHTYGRKLNWNT EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEEHHCCCEECCCE HLHLSVTRGGICERTGLWKPIYFQMKTTEPCWRAAIVSLLGKAYDELDLSSEECPYIHNK EEEEEEECCCCCHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC TDWSRFLSSQYNRRWKLHFAKKTNNVKPTMNYLGRYLKRPPISASRLSHYAKGGMITFNY CHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEEE LDHRTGTTDSLTLSPEEMIRRIVEHYPDKHFKMIRYYGFLSMRRRGEALPRVYAALGMTI ECCCCCCCCEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCEE EAEPKMPGYAAMLKGYVKVDPYECILCESRLVFTNFRVGNSVNDLVTHAIVQSELRAA EECCCCCCHHHHHCCCEEECCCEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1646375 [H]