Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695203
Identifier: 209695203
GI number: 209695203
Start: 1824758
End: 1825072
Strand: Direct
Name: 209695203
Synonym: VSAL_I1714
Alternate gene names: NA
Gene position: 1824758-1825072 (Clockwise)
Preceding gene: 209695200
Following gene: 209695204
Centisome position: 54.88
GC content: 37.78
Gene sequence:
>315_bases ATGCAAAAAGATAAAAAGAGAACACCAGAGCAATGGCACGCTCTATTTGAATCTCAGCAATCTAGCAAGCTTAGTGCCGC TGAATTTTGTCGTAACCATAATATTCTGCCAAAGACATTTAGTGCACGTAAAGCACGATGGAAACAAAAGATTAACGCTT CTACTTTCTTGAAAGTAGAAGCGTTAACATCAACTATCATCGCCACTCCACAATTACCAGATATTCAACTTTCTATCGGA AAATTGCGATTAACATTGCCAGCTAATACTGAACCTCACTGGATAGGACTCTTATTAAAAGGGTATCAATCATGA
Upstream 100 bases:
>100_bases ACTAATTAGTTTATTTAATGTAAGCGTGCGGGGAACTACACCTAACAAATAAAATTCATTATGCGTATCTTACGATCTTT CATTTAACGAGAACGTAATT
Downstream 100 bases:
>100_bases ATGTATTTACTGATATTTCCACCATTTATCTTCATCGTGATTTTGTCGATTTTCGCAAGGCCATTAATGGCCTTGTCGTG ATTGTTGAGCAAGAAATGCA
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 104; Mature: 104
Protein sequence:
>104_residues MQKDKKRTPEQWHALFESQQSSKLSAAEFCRNHNILPKTFSARKARWKQKINASTFLKVEALTSTIIATPQLPDIQLSIG KLRLTLPANTEPHWIGLLLKGYQS
Sequences:
>Translated_104_residues MQKDKKRTPEQWHALFESQQSSKLSAAEFCRNHNILPKTFSARKARWKQKINASTFLKVEALTSTIIATPQLPDIQLSIG KLRLTLPANTEPHWIGLLLKGYQS >Mature_104_residues MQKDKKRTPEQWHALFESQQSSKLSAAEFCRNHNILPKTFSARKARWKQKINASTFLKVEALTSTIIATPQLPDIQLSIG KLRLTLPANTEPHWIGLLLKGYQS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11871; Mature: 11871
Theoretical pI: Translated: 10.88; Mature: 10.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKDKKRTPEQWHALFESQQSSKLSAAEFCRNHNILPKTFSARKARWKQKINASTFLKVE CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEHH ALTSTIIATPQLPDIQLSIGKLRLTLPANTEPHWIGLLLKGYQS HHHHHHCCCCCCCCEEEEECEEEEEECCCCCCCEEEEEEECCCC >Mature Secondary Structure MQKDKKRTPEQWHALFESQQSSKLSAAEFCRNHNILPKTFSARKARWKQKINASTFLKVE CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEHH ALTSTIIATPQLPDIQLSIGKLRLTLPANTEPHWIGLLLKGYQS HHHHHHCCCCCCCCEEEEECEEEEEECCCCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA