Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695200
Identifier: 209695200
GI number: 209695200
Start: 1821513
End: 1821863
Strand: Direct
Name: 209695200
Synonym: VSAL_I1711
Alternate gene names: NA
Gene position: 1821513-1821863 (Clockwise)
Preceding gene: 209695199
Following gene: 209695203
Centisome position: 54.78
GC content: 36.47
Gene sequence:
>351_bases ATGAGCAAATTAACGTCAGATACTCAAGCAAACCTAGATCTTTTCATTGCTGAAACAAAAGAAACTCAACTAGTTTGGAG CCTTTATAACGATGAAGGTTGGATTTCTGTTGAATCTACTGAATTTGAAAACGCTGAAGTAATGCCATTTTGGTCGAACA AAGAAGATGCCGCATTTCATAATGTTGAAGAATGGGCTGATTTTGAAGTCACAGAAATCCCACTAGATATCTTCGCTGAA GATTGGTTAGTGACTTTATCTGAAGATGGTGTTTTAGTTGGTACTAACTGGAACCAACAACTTGAAGGTAAAGAAATAGA AGCGACTGAGCTTGCAAAACTATACCTTTAA
Upstream 100 bases:
>100_bases ATTAACTGATAGTTTTATAACATAATTTTTTCTAAATTTAAGTATCAAATTTCTCATAATCCTTTATTCTTTACGTGTTT ATTTTAATCGAGACATCATC
Downstream 100 bases:
>100_bases TCTACCACTTATCATTTGATAGGTAGTAAAAAGGCAGTATTTATTACTGCCTTTTTTGTGCTTACTCACTTTAGAGCACG TTATAAATTCAAAACAACCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 116; Mature: 115
Protein sequence:
>116_residues MSKLTSDTQANLDLFIAETKETQLVWSLYNDEGWISVESTEFENAEVMPFWSNKEDAAFHNVEEWADFEVTEIPLDIFAE DWLVTLSEDGVLVGTNWNQQLEGKEIEATELAKLYL
Sequences:
>Translated_116_residues MSKLTSDTQANLDLFIAETKETQLVWSLYNDEGWISVESTEFENAEVMPFWSNKEDAAFHNVEEWADFEVTEIPLDIFAE DWLVTLSEDGVLVGTNWNQQLEGKEIEATELAKLYL >Mature_115_residues SKLTSDTQANLDLFIAETKETQLVWSLYNDEGWISVESTEFENAEVMPFWSNKEDAAFHNVEEWADFEVTEIPLDIFAED WLVTLSEDGVLVGTNWNQQLEGKEIEATELAKLYL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13353; Mature: 13222
Theoretical pI: Translated: 3.56; Mature: 3.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKLTSDTQANLDLFIAETKETQLVWSLYNDEGWISVESTEFENAEVMPFWSNKEDAAFH CCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCEEEEEECCCCCCCCC NVEEWADFEVTEIPLDIFAEDWLVTLSEDGVLVGTNWNQQLEGKEIEATELAKLYL CHHHHCCCEEEECCCEEECCCEEEEECCCCEEEECCCCCCCCCCEECHHHHEEECC >Mature Secondary Structure SKLTSDTQANLDLFIAETKETQLVWSLYNDEGWISVESTEFENAEVMPFWSNKEDAAFH CCCCCCCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCEEEEEECCCCCCCCC NVEEWADFEVTEIPLDIFAEDWLVTLSEDGVLVGTNWNQQLEGKEIEATELAKLYL CHHHHCCCEEEECCCEEECCCEEEEECCCCEEEECCCCCCCCCCEECHHHHEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA