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The map label for this gene is cdd [H]

Identifier: 209695178

GI number: 209695178

Start: 1779190

End: 1780098

Strand: Direct

Name: cdd [H]

Synonym: VSAL_I1684

Alternate gene names: 209695178

Gene position: 1779190-1780098 (Clockwise)

Preceding gene: 209695177

Following gene: 209695180

Centisome position: 53.51

GC content: 40.92

Gene sequence:

>909_bases
ATGACCACTCTACATAAGAACGCCCTACAACAACGCTTACAAGAAGCCATGGATACCCTTCCTTCTTCTCTTAATACAGC
GATCGCCCCTTTAGTTAATGAGCAATTCACTGGCGTTATCACTCAAGATCAATTCCAAGCATTATTGGCTCAAAGTCAAT
TAACGGATAAAGAATTAAGATTAGCGCTGCTTCCTTTAGCGGCGGCATTTTCTGTTGCTCCTATTTCTAATTTCTATGTT
GGAGCGATTGCTCGCGGCACCTCTGGACACTTATATTTTGGTGCCAACATGGAATTCAGTAATGTTCAATTAGGCCAAAC
TATTCATGCTGAACAATCTGCAATCAGCCATGCATGGATTCATGGTGAAACAGGGATTTCAGACATCACGATCAACTTCA
GCCCATGTGGGCATTGTCGTCAATTTATGAATGAGTTAACAACGGCCGATTCATTAATGGTGCAATTACCAGAACGTGAT
GAAAAATCTCTGCAAGCGTATTTACCAGAATCGTTTGGTCCTAAAGACTTAGGTGTTGAAGGTGGTTTGTTAGCCACAAC
ATCACATAAACTGAACTTTGAATCGACATCTCCATTACTAATGCAAGCATTTGATGCTGCAAATCGTAGCCACGCCCCTT
ATTCAAAAAACTTTAGTGGTGTCGCTTTAGAAATGAATAACGGTAATATCTACCACGGTATGTACGCGGAAAACGCAGCA
TTTAACCCGAGTTTACCCCCACTTCAAGTCGCATTAATTCATGCAAATATGTCTCGCGAAGCCTTATCTGAAATCAAAAA
AGCGGCATTGGTTGAAGATCACAAAGGGGCAATCAGTCATTTAGCGATTACGACCTGTACTCTTAAAGATCTGAGTCCAA
ACATGATATTAGAATACGTGTCTTTATAG

Upstream 100 bases:

>100_bases
TAATTAATGAAAAATTGCATCATTGAGTGTGAGATTGATCTATGTTTCATTTCTTATTCCCTCTAAAATGATCCCATAAA
ACTTAAGAAGGATCATACAA

Downstream 100 bases:

>100_bases
ATTTTGACTTAAAAAAATAGAGGATGCATCAGCCTCCTCTATTTTTATCTCTGTTTATTGGTTCCCTTTCCATCGAATAG
CCGCATCAATTAGTTGTCTA

Product: cytidine deaminase

Products: NA

Alternate protein names: Cytidine aminohydrolase; CDA [H]

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MTTLHKNALQQRLQEAMDTLPSSLNTAIAPLVNEQFTGVITQDQFQALLAQSQLTDKELRLALLPLAAAFSVAPISNFYV
GAIARGTSGHLYFGANMEFSNVQLGQTIHAEQSAISHAWIHGETGISDITINFSPCGHCRQFMNELTTADSLMVQLPERD
EKSLQAYLPESFGPKDLGVEGGLLATTSHKLNFESTSPLLMQAFDAANRSHAPYSKNFSGVALEMNNGNIYHGMYAENAA
FNPSLPPLQVALIHANMSREALSEIKKAALVEDHKGAISHLAITTCTLKDLSPNMILEYVSL

Sequences:

>Translated_302_residues
MTTLHKNALQQRLQEAMDTLPSSLNTAIAPLVNEQFTGVITQDQFQALLAQSQLTDKELRLALLPLAAAFSVAPISNFYV
GAIARGTSGHLYFGANMEFSNVQLGQTIHAEQSAISHAWIHGETGISDITINFSPCGHCRQFMNELTTADSLMVQLPERD
EKSLQAYLPESFGPKDLGVEGGLLATTSHKLNFESTSPLLMQAFDAANRSHAPYSKNFSGVALEMNNGNIYHGMYAENAA
FNPSLPPLQVALIHANMSREALSEIKKAALVEDHKGAISHLAITTCTLKDLSPNMILEYVSL
>Mature_301_residues
TTLHKNALQQRLQEAMDTLPSSLNTAIAPLVNEQFTGVITQDQFQALLAQSQLTDKELRLALLPLAAAFSVAPISNFYVG
AIARGTSGHLYFGANMEFSNVQLGQTIHAEQSAISHAWIHGETGISDITINFSPCGHCRQFMNELTTADSLMVQLPERDE
KSLQAYLPESFGPKDLGVEGGLLATTSHKLNFESTSPLLMQAFDAANRSHAPYSKNFSGVALEMNNGNIYHGMYAENAAF
NPSLPPLQVALIHANMSREALSEIKKAALVEDHKGAISHLAITTCTLKDLSPNMILEYVSL

Specific function: This enzyme scavenge exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis [H]

COG id: COG0295

COG function: function code F; Cytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidine and deoxycytidylate deaminase family [H]

Homologues:

Organism=Escherichia coli, GI1788465, Length=289, Percent_Identity=47.7508650519031, Blast_Score=238, Evalue=4e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR013171
- InterPro:   IPR006263
- InterPro:   IPR016193
- InterPro:   IPR020797 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF08211 dCMP_cyt_deam_2 [H]

EC number: =3.5.4.5 [H]

Molecular weight: Translated: 32813; Mature: 32681

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLHKNALQQRLQEAMDTLPSSLNTAIAPLVNEQFTGVITQDQFQALLAQSQLTDKELR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHCCHHHHH
LALLPLAAAFSVAPISNFYVGAIARGTSGHLYFGANMEFSNVQLGQTIHAEQSAISHAWI
HHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEECCCEECCEECCCCHHHHHHHHHHEEE
HGETGISDITINFSPCGHCRQFMNELTTADSLMVQLPERDEKSLQAYLPESFGPKDLGVE
ECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHCCCCCCCCCCCCC
GGLLATTSHKLNFESTSPLLMQAFDAANRSHAPYSKNFSGVALEMNNGNIYHGMYAENAA
CCEEEEECCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC
FNPSLPPLQVALIHANMSREALSEIKKAALVEDHKGAISHLAITTCTLKDLSPNMILEYV
CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHEEEEEEEECCCCHHHHHHHH
SL
CC
>Mature Secondary Structure 
TTLHKNALQQRLQEAMDTLPSSLNTAIAPLVNEQFTGVITQDQFQALLAQSQLTDKELR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHCCHHHHH
LALLPLAAAFSVAPISNFYVGAIARGTSGHLYFGANMEFSNVQLGQTIHAEQSAISHAWI
HHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEECCCEECCEECCCCHHHHHHHHHHEEE
HGETGISDITINFSPCGHCRQFMNELTTADSLMVQLPERDEKSLQAYLPESFGPKDLGVE
ECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHCCCCCCCCCCCCC
GGLLATTSHKLNFESTSPLLMQAFDAANRSHAPYSKNFSGVALEMNNGNIYHGMYAENAA
CCEEEEECCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC
FNPSLPPLQVALIHANMSREALSEIKKAALVEDHKGAISHLAITTCTLKDLSPNMILEYV
CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHEEEEEEEECCCCHHHHHHHH
SL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA