Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695130

Identifier: 209695130

GI number: 209695130

Start: 1734710

End: 1735324

Strand: Direct

Name: 209695130

Synonym: VSAL_I1630

Alternate gene names: NA

Gene position: 1734710-1735324 (Clockwise)

Preceding gene: 209695129

Following gene: 209695131

Centisome position: 52.17

GC content: 36.26

Gene sequence:

>615_bases
ATGAACGAAACTAAAATTATAATTATGGCTAAAACCCCGGTTGCTGGTATGGCAAAAACACGTTTAATTCCTTCAATAGG
AATGGAAAACTCAGGGCGTTTAGCCAAAATGTTATTTCGACATACTATAAATGAAGCGATTTCATCAGATATAGGTCCAA
TAGAATTATGCGTAACACCTAGTCTAAATTCATCTTGTTGGAAACTATTTTCAATTCCACCAACAGTAACATGGAGCCTT
CAAAGAGAAGGAAATCTAGGAGAGCGCCTAACCTCTGTTTCAAGAAAGGCAACTCATGATTATTCAACATACGTAATAAT
TGGGACAGATTGCCCTGCTCTAACACGTGATATTTTACAATCTGCAGCTCATTCATTACACAATTCAGATTCATGTCTAG
TTCCAGTCAGTGATGGTGGTTACTCTTTACTTGGATTAACTAAGCATCATGATTCACTTTTTAATAATATCCCCTGGAGT
ACTAATCAAGTTTACGCACTAACTGAGCAACGAATAAAGTCCCTCAACTGGTCAGTAACTAAGCTTAAAGAATTACATGA
TATTGACATTATTGATGATCTAAAGTGGCTACCAAAGAGCTGGGGTTTTAACTAA

Upstream 100 bases:

>100_bases
GGGAAAACAATGGAGTTTGGAACACGATATTTCTGATGTGGAAGCTCCGTCTACTCTATTGGCTAGGCTCATCAGCAAAA
TCTCTCGCAAAGGAATATAG

Downstream 100 bases:

>100_bases
TTCTATCAAATAACCATTGCTAAAATACAAAGGGAATTTTATGTTTAATATCCATATCGGTTATTTAACCATTATCTTAT
CAATTATTGCACTCATTAGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MNETKIIIMAKTPVAGMAKTRLIPSIGMENSGRLAKMLFRHTINEAISSDIGPIELCVTPSLNSSCWKLFSIPPTVTWSL
QREGNLGERLTSVSRKATHDYSTYVIIGTDCPALTRDILQSAAHSLHNSDSCLVPVSDGGYSLLGLTKHHDSLFNNIPWS
TNQVYALTEQRIKSLNWSVTKLKELHDIDIIDDLKWLPKSWGFN

Sequences:

>Translated_204_residues
MNETKIIIMAKTPVAGMAKTRLIPSIGMENSGRLAKMLFRHTINEAISSDIGPIELCVTPSLNSSCWKLFSIPPTVTWSL
QREGNLGERLTSVSRKATHDYSTYVIIGTDCPALTRDILQSAAHSLHNSDSCLVPVSDGGYSLLGLTKHHDSLFNNIPWS
TNQVYALTEQRIKSLNWSVTKLKELHDIDIIDDLKWLPKSWGFN
>Mature_204_residues
MNETKIIIMAKTPVAGMAKTRLIPSIGMENSGRLAKMLFRHTINEAISSDIGPIELCVTPSLNSSCWKLFSIPPTVTWSL
QREGNLGERLTSVSRKATHDYSTYVIIGTDCPALTRDILQSAAHSLHNSDSCLVPVSDGGYSLLGLTKHHDSLFNNIPWS
TNQVYALTEQRIKSLNWSVTKLKELHDIDIIDDLKWLPKSWGFN

Specific function: Unknown

COG id: COG3222

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22721; Mature: 22721

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNETKIIIMAKTPVAGMAKTRLIPSIGMENSGRLAKMLFRHTINEAISSDIGPIELCVTP
CCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC
SLNSSCWKLFSIPPTVTWSLQREGNLGERLTSVSRKATHDYSTYVIIGTDCPALTRDILQ
CCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH
SAAHSLHNSDSCLVPVSDGGYSLLGLTKHHDSLFNNIPWSTNQVYALTEQRIKSLNWSVT
HHHHHHCCCCCEEEEECCCCEEEEEEEHHHHHHHHCCCCCCCEEEEEHHHHHHHCCCHHH
KLKELHDIDIIDDLKWLPKSWGFN
HHHHHHCCCHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNETKIIIMAKTPVAGMAKTRLIPSIGMENSGRLAKMLFRHTINEAISSDIGPIELCVTP
CCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC
SLNSSCWKLFSIPPTVTWSLQREGNLGERLTSVSRKATHDYSTYVIIGTDCPALTRDILQ
CCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH
SAAHSLHNSDSCLVPVSDGGYSLLGLTKHHDSLFNNIPWSTNQVYALTEQRIKSLNWSVT
HHHHHHCCCCCEEEEECCCCEEEEEEEHHHHHHHHCCCCCCCEEEEEHHHHHHHCCCHHH
KLKELHDIDIIDDLKWLPKSWGFN
HHHHHHCCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA