Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695107

Identifier: 209695107

GI number: 209695107

Start: 1712535

End: 1712927

Strand: Direct

Name: 209695107

Synonym: VSAL_I1606

Alternate gene names: NA

Gene position: 1712535-1712927 (Clockwise)

Preceding gene: 209695105

Following gene: 209695109

Centisome position: 51.5

GC content: 34.35

Gene sequence:

>393_bases
ATGATAAATAGAATACCGTTAGCCCTTGGCGCTGGTTACCTTGGTTCTATTGCAAATATACTCGTAATTTCGTTAATCAA
CATTACCACTAATGATGATTTTAGCCTTGATAAAAACTTTGTTTACAAACAGGTTTTTTGGGGAGGTTTGTGGGCTATTC
TTTATTGCCTTCCTGTTTTGAAAAACCAATGGATAGTAAAAGGGATCGTGGTTTCTGCATTAGCTAGTTTTTGCACCTTT
TTCATATTCCAAAGTATCCCGTTGAATGCTTTGAATATTATTCGAGCATTTATTGTTAATATGATATTTTGGGGTGGCAT
TTCATCTTTTATTTACCACAAAGCCATTACGTCACAAGACAACAACAAAACACCGTCATCTAAAAAATCATAG

Upstream 100 bases:

>100_bases
AATAATTCTTGGTCGAAAGATCTGATCGTTAGGTGGGCAATTAGTTCAGCCTTATCCAGAATTCAGGTTAGTTATACATT
TAAATACAGGAATAATTAGG

Downstream 100 bases:

>100_bases
TTTTTTATTAATACAGTAACTCAATGATATAAAGCACCAATATTTTTGGTGCTTTAATTTTTCAAATACTAGATTACTGT
TATCTCTATTTTTAACACAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MINRIPLALGAGYLGSIANILVISLINITTNDDFSLDKNFVYKQVFWGGLWAILYCLPVLKNQWIVKGIVVSALASFCTF
FIFQSIPLNALNIIRAFIVNMIFWGGISSFIYHKAITSQDNNKTPSSKKS

Sequences:

>Translated_130_residues
MINRIPLALGAGYLGSIANILVISLINITTNDDFSLDKNFVYKQVFWGGLWAILYCLPVLKNQWIVKGIVVSALASFCTF
FIFQSIPLNALNIIRAFIVNMIFWGGISSFIYHKAITSQDNNKTPSSKKS
>Mature_130_residues
MINRIPLALGAGYLGSIANILVISLINITTNDDFSLDKNFVYKQVFWGGLWAILYCLPVLKNQWIVKGIVVSALASFCTF
FIFQSIPLNALNIIRAFIVNMIFWGGISSFIYHKAITSQDNNKTPSSKKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14508; Mature: 14508

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINRIPLALGAGYLGSIANILVISLINITTNDDFSLDKNFVYKQVFWGGLWAILYCLPVL
CCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KNQWIVKGIVVSALASFCTFFIFQSIPLNALNIIRAFIVNMIFWGGISSFIYHKAITSQD
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NNKTPSSKKS
CCCCCCCCCC
>Mature Secondary Structure
MINRIPLALGAGYLGSIANILVISLINITTNDDFSLDKNFVYKQVFWGGLWAILYCLPVL
CCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KNQWIVKGIVVSALASFCTFFIFQSIPLNALNIIRAFIVNMIFWGGISSFIYHKAITSQD
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NNKTPSSKKS
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA