Click here to switch to the map view.

The map label for this gene is rmf [H]

Identifier: 209695058

GI number: 209695058

Start: 1666969

End: 1667142

Strand: Direct

Name: rmf [H]

Synonym: VSAL_I1555

Alternate gene names: 209695058

Gene position: 1666969-1667142 (Clockwise)

Preceding gene: 209695057

Following gene: 209695061

Centisome position: 50.13

GC content: 44.83

Gene sequence:

>174_bases
ATGAAGAGACAAAAGCGTGATCGTTTAGAGCGAGCACAATCACAAGGGTATAAAGCGGGTATTAATGGCCGCTCATCAGA
AAATTGCCCATATCAAACAATGGATGCTCGCTCATGCTGGCTTGGTGGTTGGCGAGACGCTAGAGATGACAAACAGTCCG
GTTTGTTTAAATAA

Upstream 100 bases:

>100_bases
TGAAATGTTCGTGATGAACCCTAATGGAAAATAATAGGGTATGAGTAGTAAAGTAGTACATTTTTGAAGTATACAGACTT
ACATCTATGAGGACTGAACT

Downstream 100 bases:

>100_bases
TACGGTAGAATTTAAGATTAAAGCCTCTATTTGAGGCTTTAGTTATATTTAAGGTATTAAACTAGTTTAACTAGCGCACT
ATAACTTGCTTGTGTGTTCC

Product: ribosome modulation factor

Products: NA

Alternate protein names: Protein E [H]

Number of amino acids: Translated: 57; Mature: 57

Protein sequence:

>57_residues
MKRQKRDRLERAQSQGYKAGINGRSSENCPYQTMDARSCWLGGWRDARDDKQSGLFK

Sequences:

>Translated_57_residues
MKRQKRDRLERAQSQGYKAGINGRSSENCPYQTMDARSCWLGGWRDARDDKQSGLFK
>Mature_57_residues
MKRQKRDRLERAQSQGYKAGINGRSSENCPYQTMDARSCWLGGWRDARDDKQSGLFK

Specific function: Associates with 70S ribosomes and converts them to a dimeric form (100S ribosomes) which appears during the transition from the exponential growth phase to the stationary phase of E.coli cells [H]

COG id: COG3130

COG function: function code J; Ribosome modulation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787186, Length=51, Percent_Identity=70.5882352941177, Blast_Score=78, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007040
- InterPro:   IPR023200
- ProDom:   PD051650 [H]

Pfam domain/function: PF04957 RMF [H]

EC number: NA

Molecular weight: Translated: 6638; Mature: 6638

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRQKRDRLERAQSQGYKAGINGRSSENCPYQTMDARSCWLGGWRDARDDKQSGLFK
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKRQKRDRLERAQSQGYKAGINGRSSENCPYQTMDARSCWLGGWRDARDDKQSGLFK
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]