Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695057
Identifier: 209695057
GI number: 209695057
Start: 1665104
End: 1666768
Strand: Direct
Name: 209695057
Synonym: VSAL_I1554
Alternate gene names: NA
Gene position: 1665104-1666768 (Clockwise)
Preceding gene: 209695056
Following gene: 209695058
Centisome position: 50.08
GC content: 40.54
Gene sequence:
>1665_bases ATGAGTAATAAATTACAATTAACCACATTAGCTGTTTTAGTGTCCGCTGCGCTTCCTGCGCAAGCGGCGCTTTATAAAGT GGTGGAAGTAACCCCAAGTGTTTCAGGTTCTGAGTACTACGGTACTGCGATTGAGCCATCTCCAATTACGGATAATGGTG CAAATAGTTTAGGTTGTTTTGAAACGACAGCTTCATCTGTAACATGTGAAGGCTATAAATTAGCTGGTGAAACTCGTGAC CGTGCTGAAGGGGTTTCATATACTGAAGAAGTTCCTTTTGCGATGGATAATTCCTTTGGCTATATCGAAGATGATTATGA TGGCTTTGTAAACTATTGTTTTTACCAACTAGGCTACTCTACCTGTAAATACTGGGCTAATAATCAGTGGACTGGTTGGT CTAACGAGATTTATGGCAGTAATGATAAAAACTCTTTAGCATTTGTTACTGATGGTGGAACTATTGCTGCTAGTGGAATT AATACGGTCATTAATTCGCTTGATTCAGCTGGCGCTGCTGTTGGGAACTTTAGTTCTACTACTAATAGAAATGCACCAAT AAGTGGCGATAGTATTACTGGCTTTCAACAAGGCCGTCAATGGTCTACTGATGGAACTTATACGGTAGGAAGTGTTACTT CGAAAACAGGCATTGGTGCTGATAGGTATGATTACTATTCAAAACCAGCCGTATGGACAAAGTCAACATCAACGCTAACG GCTGTTAATTGGGCGCATGATGACGAAGAAGATGGCGATTATTATGCGCAAGGCAGTATGCGTGATCTGTATGTGAATGG TACGGAGTTTTATGGTGTTGGTTATAATAACTATGATGACCAACACATGAATGCCACTATATTTCAAGCTTCAATAAATG TAACTACGGGTGCTTTAGGAATTGTTGGGTCTACTCTAATTAGTGGTGCTCAGGTTGAAATTAGTGGTGATAACGTTAAC TCTAATTCAGTTGCTACGAACATTAATGACAATTTAGTTGTTGTCGGTCAAGCTAAGCGTTCTGGTAGTTACCCCCAAAA TGGGGCGGCGGGAAATCGTTTATTCGTTACTTCTGCAACTTCGCCAACGGCTCACTTCCTGGATTCATCAGATGGAGAGA TCTTCTTTAACGGTGTTGGTGGGGAGATGGGGAGCATCAATAATTTCAATGAGATTGTTGGTCGTATCGATGTTGATACA TTCCGTGAGTATGATGGTAAACAACGCCGCCAGCGTGCGTTTATTTATCCATACAAACCAACAGAATCTGCGCGTGCTGA TATTTTTCAAAATAAAGCATGGATCATCGATAATTTAACGAACGGTGGTACATACTCTGGAAATAATAACCAATATCGTA TTTATGATGCGACGGATATTAATGATGCTGGCGTTATCTCGGCGACTGCGACTAAATGTTATGATGAAAATGGATCTACA GTTCAAGAGTATGATTCAACGGTTCATGATGCATATTGTGGTGACGGGAATGGTACTGAAAAAATTGTAGCGGTTAAATT GGTTCCGATCTCAGATCCTGCTAACCGAAACATTGAAACTCGTGGTTATGAGAATAATACAACAGAACGTCAAGGCGGTT CATTAGGCTTTGGGGCTCTGACATTACTTGGTTTGTTTGGTTTCATGCGTAAACGTAGTAAATAA
Upstream 100 bases:
>100_bases CAACAGAAGCTGTTTTAGAACGTTTAGCTCAAACAGAGCAAGAGTTGGAAGTGGCATTCGAGCGTTGGGAAGAACTTGAA GCTCTACAATAGGAAGTTAA
Downstream 100 bases:
>100_bases CATCCATTGATGATAATTAGCCCGAAGTCACAATCTTAGACTTCGGGTTTTTTTATACTTGAATAAAGTGAAAAGTTGTC CGATTCTTAAAGTGTCATCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 554; Mature: 553
Protein sequence:
>554_residues MSNKLQLTTLAVLVSAALPAQAALYKVVEVTPSVSGSEYYGTAIEPSPITDNGANSLGCFETTASSVTCEGYKLAGETRD RAEGVSYTEEVPFAMDNSFGYIEDDYDGFVNYCFYQLGYSTCKYWANNQWTGWSNEIYGSNDKNSLAFVTDGGTIAASGI NTVINSLDSAGAAVGNFSSTTNRNAPISGDSITGFQQGRQWSTDGTYTVGSVTSKTGIGADRYDYYSKPAVWTKSTSTLT AVNWAHDDEEDGDYYAQGSMRDLYVNGTEFYGVGYNNYDDQHMNATIFQASINVTTGALGIVGSTLISGAQVEISGDNVN SNSVATNINDNLVVVGQAKRSGSYPQNGAAGNRLFVTSATSPTAHFLDSSDGEIFFNGVGGEMGSINNFNEIVGRIDVDT FREYDGKQRRQRAFIYPYKPTESARADIFQNKAWIIDNLTNGGTYSGNNNQYRIYDATDINDAGVISATATKCYDENGST VQEYDSTVHDAYCGDGNGTEKIVAVKLVPISDPANRNIETRGYENNTTERQGGSLGFGALTLLGLFGFMRKRSK
Sequences:
>Translated_554_residues MSNKLQLTTLAVLVSAALPAQAALYKVVEVTPSVSGSEYYGTAIEPSPITDNGANSLGCFETTASSVTCEGYKLAGETRD RAEGVSYTEEVPFAMDNSFGYIEDDYDGFVNYCFYQLGYSTCKYWANNQWTGWSNEIYGSNDKNSLAFVTDGGTIAASGI NTVINSLDSAGAAVGNFSSTTNRNAPISGDSITGFQQGRQWSTDGTYTVGSVTSKTGIGADRYDYYSKPAVWTKSTSTLT AVNWAHDDEEDGDYYAQGSMRDLYVNGTEFYGVGYNNYDDQHMNATIFQASINVTTGALGIVGSTLISGAQVEISGDNVN SNSVATNINDNLVVVGQAKRSGSYPQNGAAGNRLFVTSATSPTAHFLDSSDGEIFFNGVGGEMGSINNFNEIVGRIDVDT FREYDGKQRRQRAFIYPYKPTESARADIFQNKAWIIDNLTNGGTYSGNNNQYRIYDATDINDAGVISATATKCYDENGST VQEYDSTVHDAYCGDGNGTEKIVAVKLVPISDPANRNIETRGYENNTTERQGGSLGFGALTLLGLFGFMRKRSK >Mature_553_residues SNKLQLTTLAVLVSAALPAQAALYKVVEVTPSVSGSEYYGTAIEPSPITDNGANSLGCFETTASSVTCEGYKLAGETRDR AEGVSYTEEVPFAMDNSFGYIEDDYDGFVNYCFYQLGYSTCKYWANNQWTGWSNEIYGSNDKNSLAFVTDGGTIAASGIN TVINSLDSAGAAVGNFSSTTNRNAPISGDSITGFQQGRQWSTDGTYTVGSVTSKTGIGADRYDYYSKPAVWTKSTSTLTA VNWAHDDEEDGDYYAQGSMRDLYVNGTEFYGVGYNNYDDQHMNATIFQASINVTTGALGIVGSTLISGAQVEISGDNVNS NSVATNINDNLVVVGQAKRSGSYPQNGAAGNRLFVTSATSPTAHFLDSSDGEIFFNGVGGEMGSINNFNEIVGRIDVDTF REYDGKQRRQRAFIYPYKPTESARADIFQNKAWIIDNLTNGGTYSGNNNQYRIYDATDINDAGVISATATKCYDENGSTV QEYDSTVHDAYCGDGNGTEKIVAVKLVPISDPANRNIETRGYENNTTERQGGSLGFGALTLLGLFGFMRKRSK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59680; Mature: 59549
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNKLQLTTLAVLVSAALPAQAALYKVVEVTPSVSGSEYYGTAIEPSPITDNGANSLGCF CCCCEEHHHHHHHHHHCCCHHHHHEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCE ETTASSVTCEGYKLAGETRDRAEGVSYTEEVPFAMDNSFGYIEDDYDGFVNYCFYQLGYS ECCCCCEEECCEEECCCCCHHHCCCCCHHCCCEEECCCCCCEECCHHHHHHHHHHHHCHH TCKYWANNQWTGWSNEIYGSNDKNSLAFVTDGGTIAASGINTVINSLDSAGAAVGNFSST HHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECHHHHHHHHHHHCCCCCCCCCCC TNRNAPISGDSITGFQQGRQWSTDGTYTVGSVTSKTGIGADRYDYYSKPAVWTKSTSTLT CCCCCCCCCCCCCHHHCCCEECCCCCEEECCCCCCCCCCCCHHHCCCCCEEEECCCCEEE AVNWAHDDEEDGDYYAQGSMRDLYVNGTEFYGVGYNNYDDQHMNATIFQASINVTTGALG EEECCCCCCCCCCEEECCCCEEEEECCEEEEECCCCCCCCCCCCEEEEEEEEEEECCHHH IVGSTLISGAQVEISGDNVNSNSVATNINDNLVVVGQAKRSGSYPQNGAAGNRLFVTSAT HHHHHHHCCCEEEEECCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECC SPTAHFLDSSDGEIFFNGVGGEMGSINNFNEIVGRIDVDTFREYDGKQRRQRAFIYPYKP CCCHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCHHHHHHCCCHHHHCCEEEEECCC TESARADIFQNKAWIIDNLTNGGTYSGNNNQYRIYDATDINDAGVISATATKCYDENGST CCCHHHHHHCCCEEEEECCCCCCEECCCCCEEEEEECCCCCCCCEEEEEEHEEECCCCCC VQEYDSTVHDAYCGDGNGTEKIVAVKLVPISDPANRNIETRGYENNTTERQGGSLGFGAL HHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH TLLGLFGFMRKRSK HHHHHHHHHHHCCC >Mature Secondary Structure SNKLQLTTLAVLVSAALPAQAALYKVVEVTPSVSGSEYYGTAIEPSPITDNGANSLGCF CCCEEHHHHHHHHHHCCCHHHHHEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCE ETTASSVTCEGYKLAGETRDRAEGVSYTEEVPFAMDNSFGYIEDDYDGFVNYCFYQLGYS ECCCCCEEECCEEECCCCCHHHCCCCCHHCCCEEECCCCCCEECCHHHHHHHHHHHHCHH TCKYWANNQWTGWSNEIYGSNDKNSLAFVTDGGTIAASGINTVINSLDSAGAAVGNFSST HHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECHHHHHHHHHHHCCCCCCCCCCC TNRNAPISGDSITGFQQGRQWSTDGTYTVGSVTSKTGIGADRYDYYSKPAVWTKSTSTLT CCCCCCCCCCCCCHHHCCCEECCCCCEEECCCCCCCCCCCCHHHCCCCCEEEECCCCEEE AVNWAHDDEEDGDYYAQGSMRDLYVNGTEFYGVGYNNYDDQHMNATIFQASINVTTGALG EEECCCCCCCCCCEEECCCCEEEEECCEEEEECCCCCCCCCCCCEEEEEEEEEEECCHHH IVGSTLISGAQVEISGDNVNSNSVATNINDNLVVVGQAKRSGSYPQNGAAGNRLFVTSAT HHHHHHHCCCEEEEECCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECC SPTAHFLDSSDGEIFFNGVGGEMGSINNFNEIVGRIDVDTFREYDGKQRRQRAFIYPYKP CCCHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCHHHHHHCCCHHHHCCEEEEECCC TESARADIFQNKAWIIDNLTNGGTYSGNNNQYRIYDATDINDAGVISATATKCYDENGST CCCHHHHHHCCCEEEEECCCCCCEECCCCCEEEEEECCCCCCCCEEEEEEHEEECCCCCC VQEYDSTVHDAYCGDGNGTEKIVAVKLVPISDPANRNIETRGYENNTTERQGGSLGFGAL HHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH TLLGLFGFMRKRSK HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA