Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695057

Identifier: 209695057

GI number: 209695057

Start: 1665104

End: 1666768

Strand: Direct

Name: 209695057

Synonym: VSAL_I1554

Alternate gene names: NA

Gene position: 1665104-1666768 (Clockwise)

Preceding gene: 209695056

Following gene: 209695058

Centisome position: 50.08

GC content: 40.54

Gene sequence:

>1665_bases
ATGAGTAATAAATTACAATTAACCACATTAGCTGTTTTAGTGTCCGCTGCGCTTCCTGCGCAAGCGGCGCTTTATAAAGT
GGTGGAAGTAACCCCAAGTGTTTCAGGTTCTGAGTACTACGGTACTGCGATTGAGCCATCTCCAATTACGGATAATGGTG
CAAATAGTTTAGGTTGTTTTGAAACGACAGCTTCATCTGTAACATGTGAAGGCTATAAATTAGCTGGTGAAACTCGTGAC
CGTGCTGAAGGGGTTTCATATACTGAAGAAGTTCCTTTTGCGATGGATAATTCCTTTGGCTATATCGAAGATGATTATGA
TGGCTTTGTAAACTATTGTTTTTACCAACTAGGCTACTCTACCTGTAAATACTGGGCTAATAATCAGTGGACTGGTTGGT
CTAACGAGATTTATGGCAGTAATGATAAAAACTCTTTAGCATTTGTTACTGATGGTGGAACTATTGCTGCTAGTGGAATT
AATACGGTCATTAATTCGCTTGATTCAGCTGGCGCTGCTGTTGGGAACTTTAGTTCTACTACTAATAGAAATGCACCAAT
AAGTGGCGATAGTATTACTGGCTTTCAACAAGGCCGTCAATGGTCTACTGATGGAACTTATACGGTAGGAAGTGTTACTT
CGAAAACAGGCATTGGTGCTGATAGGTATGATTACTATTCAAAACCAGCCGTATGGACAAAGTCAACATCAACGCTAACG
GCTGTTAATTGGGCGCATGATGACGAAGAAGATGGCGATTATTATGCGCAAGGCAGTATGCGTGATCTGTATGTGAATGG
TACGGAGTTTTATGGTGTTGGTTATAATAACTATGATGACCAACACATGAATGCCACTATATTTCAAGCTTCAATAAATG
TAACTACGGGTGCTTTAGGAATTGTTGGGTCTACTCTAATTAGTGGTGCTCAGGTTGAAATTAGTGGTGATAACGTTAAC
TCTAATTCAGTTGCTACGAACATTAATGACAATTTAGTTGTTGTCGGTCAAGCTAAGCGTTCTGGTAGTTACCCCCAAAA
TGGGGCGGCGGGAAATCGTTTATTCGTTACTTCTGCAACTTCGCCAACGGCTCACTTCCTGGATTCATCAGATGGAGAGA
TCTTCTTTAACGGTGTTGGTGGGGAGATGGGGAGCATCAATAATTTCAATGAGATTGTTGGTCGTATCGATGTTGATACA
TTCCGTGAGTATGATGGTAAACAACGCCGCCAGCGTGCGTTTATTTATCCATACAAACCAACAGAATCTGCGCGTGCTGA
TATTTTTCAAAATAAAGCATGGATCATCGATAATTTAACGAACGGTGGTACATACTCTGGAAATAATAACCAATATCGTA
TTTATGATGCGACGGATATTAATGATGCTGGCGTTATCTCGGCGACTGCGACTAAATGTTATGATGAAAATGGATCTACA
GTTCAAGAGTATGATTCAACGGTTCATGATGCATATTGTGGTGACGGGAATGGTACTGAAAAAATTGTAGCGGTTAAATT
GGTTCCGATCTCAGATCCTGCTAACCGAAACATTGAAACTCGTGGTTATGAGAATAATACAACAGAACGTCAAGGCGGTT
CATTAGGCTTTGGGGCTCTGACATTACTTGGTTTGTTTGGTTTCATGCGTAAACGTAGTAAATAA

Upstream 100 bases:

>100_bases
CAACAGAAGCTGTTTTAGAACGTTTAGCTCAAACAGAGCAAGAGTTGGAAGTGGCATTCGAGCGTTGGGAAGAACTTGAA
GCTCTACAATAGGAAGTTAA

Downstream 100 bases:

>100_bases
CATCCATTGATGATAATTAGCCCGAAGTCACAATCTTAGACTTCGGGTTTTTTTATACTTGAATAAAGTGAAAAGTTGTC
CGATTCTTAAAGTGTCATCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 554; Mature: 553

Protein sequence:

>554_residues
MSNKLQLTTLAVLVSAALPAQAALYKVVEVTPSVSGSEYYGTAIEPSPITDNGANSLGCFETTASSVTCEGYKLAGETRD
RAEGVSYTEEVPFAMDNSFGYIEDDYDGFVNYCFYQLGYSTCKYWANNQWTGWSNEIYGSNDKNSLAFVTDGGTIAASGI
NTVINSLDSAGAAVGNFSSTTNRNAPISGDSITGFQQGRQWSTDGTYTVGSVTSKTGIGADRYDYYSKPAVWTKSTSTLT
AVNWAHDDEEDGDYYAQGSMRDLYVNGTEFYGVGYNNYDDQHMNATIFQASINVTTGALGIVGSTLISGAQVEISGDNVN
SNSVATNINDNLVVVGQAKRSGSYPQNGAAGNRLFVTSATSPTAHFLDSSDGEIFFNGVGGEMGSINNFNEIVGRIDVDT
FREYDGKQRRQRAFIYPYKPTESARADIFQNKAWIIDNLTNGGTYSGNNNQYRIYDATDINDAGVISATATKCYDENGST
VQEYDSTVHDAYCGDGNGTEKIVAVKLVPISDPANRNIETRGYENNTTERQGGSLGFGALTLLGLFGFMRKRSK

Sequences:

>Translated_554_residues
MSNKLQLTTLAVLVSAALPAQAALYKVVEVTPSVSGSEYYGTAIEPSPITDNGANSLGCFETTASSVTCEGYKLAGETRD
RAEGVSYTEEVPFAMDNSFGYIEDDYDGFVNYCFYQLGYSTCKYWANNQWTGWSNEIYGSNDKNSLAFVTDGGTIAASGI
NTVINSLDSAGAAVGNFSSTTNRNAPISGDSITGFQQGRQWSTDGTYTVGSVTSKTGIGADRYDYYSKPAVWTKSTSTLT
AVNWAHDDEEDGDYYAQGSMRDLYVNGTEFYGVGYNNYDDQHMNATIFQASINVTTGALGIVGSTLISGAQVEISGDNVN
SNSVATNINDNLVVVGQAKRSGSYPQNGAAGNRLFVTSATSPTAHFLDSSDGEIFFNGVGGEMGSINNFNEIVGRIDVDT
FREYDGKQRRQRAFIYPYKPTESARADIFQNKAWIIDNLTNGGTYSGNNNQYRIYDATDINDAGVISATATKCYDENGST
VQEYDSTVHDAYCGDGNGTEKIVAVKLVPISDPANRNIETRGYENNTTERQGGSLGFGALTLLGLFGFMRKRSK
>Mature_553_residues
SNKLQLTTLAVLVSAALPAQAALYKVVEVTPSVSGSEYYGTAIEPSPITDNGANSLGCFETTASSVTCEGYKLAGETRDR
AEGVSYTEEVPFAMDNSFGYIEDDYDGFVNYCFYQLGYSTCKYWANNQWTGWSNEIYGSNDKNSLAFVTDGGTIAASGIN
TVINSLDSAGAAVGNFSSTTNRNAPISGDSITGFQQGRQWSTDGTYTVGSVTSKTGIGADRYDYYSKPAVWTKSTSTLTA
VNWAHDDEEDGDYYAQGSMRDLYVNGTEFYGVGYNNYDDQHMNATIFQASINVTTGALGIVGSTLISGAQVEISGDNVNS
NSVATNINDNLVVVGQAKRSGSYPQNGAAGNRLFVTSATSPTAHFLDSSDGEIFFNGVGGEMGSINNFNEIVGRIDVDTF
REYDGKQRRQRAFIYPYKPTESARADIFQNKAWIIDNLTNGGTYSGNNNQYRIYDATDINDAGVISATATKCYDENGSTV
QEYDSTVHDAYCGDGNGTEKIVAVKLVPISDPANRNIETRGYENNTTERQGGSLGFGALTLLGLFGFMRKRSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59680; Mature: 59549

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKLQLTTLAVLVSAALPAQAALYKVVEVTPSVSGSEYYGTAIEPSPITDNGANSLGCF
CCCCEEHHHHHHHHHHCCCHHHHHEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCE
ETTASSVTCEGYKLAGETRDRAEGVSYTEEVPFAMDNSFGYIEDDYDGFVNYCFYQLGYS
ECCCCCEEECCEEECCCCCHHHCCCCCHHCCCEEECCCCCCEECCHHHHHHHHHHHHCHH
TCKYWANNQWTGWSNEIYGSNDKNSLAFVTDGGTIAASGINTVINSLDSAGAAVGNFSST
HHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECHHHHHHHHHHHCCCCCCCCCCC
TNRNAPISGDSITGFQQGRQWSTDGTYTVGSVTSKTGIGADRYDYYSKPAVWTKSTSTLT
CCCCCCCCCCCCCHHHCCCEECCCCCEEECCCCCCCCCCCCHHHCCCCCEEEECCCCEEE
AVNWAHDDEEDGDYYAQGSMRDLYVNGTEFYGVGYNNYDDQHMNATIFQASINVTTGALG
EEECCCCCCCCCCEEECCCCEEEEECCEEEEECCCCCCCCCCCCEEEEEEEEEEECCHHH
IVGSTLISGAQVEISGDNVNSNSVATNINDNLVVVGQAKRSGSYPQNGAAGNRLFVTSAT
HHHHHHHCCCEEEEECCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECC
SPTAHFLDSSDGEIFFNGVGGEMGSINNFNEIVGRIDVDTFREYDGKQRRQRAFIYPYKP
CCCHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCHHHHHHCCCHHHHCCEEEEECCC
TESARADIFQNKAWIIDNLTNGGTYSGNNNQYRIYDATDINDAGVISATATKCYDENGST
CCCHHHHHHCCCEEEEECCCCCCEECCCCCEEEEEECCCCCCCCEEEEEEHEEECCCCCC
VQEYDSTVHDAYCGDGNGTEKIVAVKLVPISDPANRNIETRGYENNTTERQGGSLGFGAL
HHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
TLLGLFGFMRKRSK
HHHHHHHHHHHCCC
>Mature Secondary Structure 
SNKLQLTTLAVLVSAALPAQAALYKVVEVTPSVSGSEYYGTAIEPSPITDNGANSLGCF
CCCEEHHHHHHHHHHCCCHHHHHEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCE
ETTASSVTCEGYKLAGETRDRAEGVSYTEEVPFAMDNSFGYIEDDYDGFVNYCFYQLGYS
ECCCCCEEECCEEECCCCCHHHCCCCCHHCCCEEECCCCCCEECCHHHHHHHHHHHHCHH
TCKYWANNQWTGWSNEIYGSNDKNSLAFVTDGGTIAASGINTVINSLDSAGAAVGNFSST
HHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECHHHHHHHHHHHCCCCCCCCCCC
TNRNAPISGDSITGFQQGRQWSTDGTYTVGSVTSKTGIGADRYDYYSKPAVWTKSTSTLT
CCCCCCCCCCCCCHHHCCCEECCCCCEEECCCCCCCCCCCCHHHCCCCCEEEECCCCEEE
AVNWAHDDEEDGDYYAQGSMRDLYVNGTEFYGVGYNNYDDQHMNATIFQASINVTTGALG
EEECCCCCCCCCCEEECCCCEEEEECCEEEEECCCCCCCCCCCCEEEEEEEEEEECCHHH
IVGSTLISGAQVEISGDNVNSNSVATNINDNLVVVGQAKRSGSYPQNGAAGNRLFVTSAT
HHHHHHHCCCEEEEECCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECC
SPTAHFLDSSDGEIFFNGVGGEMGSINNFNEIVGRIDVDTFREYDGKQRRQRAFIYPYKP
CCCHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCHHHHHHCCCHHHHCCEEEEECCC
TESARADIFQNKAWIIDNLTNGGTYSGNNNQYRIYDATDINDAGVISATATKCYDENGST
CCCHHHHHHCCCEEEEECCCCCCEECCCCCEEEEEECCCCCCCCEEEEEEHEEECCCCCC
VQEYDSTVHDAYCGDGNGTEKIVAVKLVPISDPANRNIETRGYENNTTERQGGSLGFGAL
HHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
TLLGLFGFMRKRSK
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA