Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695027
Identifier: 209695027
GI number: 209695027
Start: 1621031
End: 1621381
Strand: Direct
Name: 209695027
Synonym: VSAL_I1519
Alternate gene names: NA
Gene position: 1621031-1621381 (Clockwise)
Preceding gene: 209695026
Following gene: 209695028
Centisome position: 48.75
GC content: 38.18
Gene sequence:
>351_bases ATGTCTTTTGAAGAGAAGTTAATAGCGGCACATAGTGAACTTGAGCTGAAAGGGGTTTGGTCCTCAAACTTTAATCCTCC GATTGTCAGATTACTCCGAAAAGCGGGCTTACGAGTTCGACCTCCTTATTATCAAGATTTTTTTACTAATTTACTGTTTA CCTCGCTTTTATTTAGTCTTGGTTACGGGCTGATTAGTTGGTTTTTAACGGGGCAGTATGTAAATAAAACCAACCAACAG TCAGTCATTGAAGCCATCGCAGGCGGATTGATTTTTGGCGTTATAATATCCGTATTTTATCTTATCCGTCGTAAGCAATT AAAGCTAACGGATTGGAATACATTGAGTTAA
Upstream 100 bases:
>100_bases TAAGTGGATAGAAAAGAAATATCAAGAGCATGAAGACTCAAAAAAGTGAAGGTGGTGTTATCTTCATCGTTATGGATAGT ATTGTTTAGGGAAACGACGA
Downstream 100 bases:
>100_bases TGCTATTACGTCGCAAGTTTGATGACATTGTTGTGTTTATAAAAGGAATTTATAATGATTCACACGATTAAAGAAACGGT ATTTACCTATCCTCAACGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 116; Mature: 115
Protein sequence:
>116_residues MSFEEKLIAAHSELELKGVWSSNFNPPIVRLLRKAGLRVRPPYYQDFFTNLLFTSLLFSLGYGLISWFLTGQYVNKTNQQ SVIEAIAGGLIFGVIISVFYLIRRKQLKLTDWNTLS
Sequences:
>Translated_116_residues MSFEEKLIAAHSELELKGVWSSNFNPPIVRLLRKAGLRVRPPYYQDFFTNLLFTSLLFSLGYGLISWFLTGQYVNKTNQQ SVIEAIAGGLIFGVIISVFYLIRRKQLKLTDWNTLS >Mature_115_residues SFEEKLIAAHSELELKGVWSSNFNPPIVRLLRKAGLRVRPPYYQDFFTNLLFTSLLFSLGYGLISWFLTGQYVNKTNQQS VIEAIAGGLIFGVIISVFYLIRRKQLKLTDWNTLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13320; Mature: 13189
Theoretical pI: Translated: 10.20; Mature: 10.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFEEKLIAAHSELELKGVWSSNFNPPIVRLLRKAGLRVRPPYYQDFFTNLLFTSLLFSL CCHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH GYGLISWFLTGQYVNKTNQQSVIEAIAGGLIFGVIISVFYLIRRKQLKLTDWNTLS HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure SFEEKLIAAHSELELKGVWSSNFNPPIVRLLRKAGLRVRPPYYQDFFTNLLFTSLLFSL CHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH GYGLISWFLTGQYVNKTNQQSVIEAIAGGLIFGVIISVFYLIRRKQLKLTDWNTLS HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA