Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695020
Identifier: 209695020
GI number: 209695020
Start: 1614657
End: 1614923
Strand: Direct
Name: 209695020
Synonym: VSAL_I1512
Alternate gene names: NA
Gene position: 1614657-1614923 (Clockwise)
Preceding gene: 209695019
Following gene: 209695021
Centisome position: 48.56
GC content: 35.96
Gene sequence:
>267_bases GTGTTATTTAAGTTGATTTTTCTGTTTGCCGCATTAACGCTACATGGTGTAAAGAGATCCCCTTATCCGCCGACATTACT CTATAGTATTCCTCTGATATTAATGGGGTTAATGTCGGGTGCGTCTTTTATTATGAGTTTGATTGGTGGCGCGATAACCC TTTGCGTTTCATTTGTGTATTTTTCATTACTTACTCATTTTTCAAGTGGTACACAGCATTACACGATTATTATACTTGGT GGTGGTTTATTGATTTTCTTTGTTTAA
Upstream 100 bases:
>100_bases TATGCATATTTGGGTTTCTGAAAAATTGAGTTGGGTCCAAATTCCTAAGGGAATGGTGACGTTTGATAAACAACGTTAAT GATAAAGATTAGGAGCTCAT
Downstream 100 bases:
>100_bases GCACGAGCACAACGATAAATTAAGAATGGTATTGGATTTTACAAGGATGAAAGAGTGACGGTAACGGAAGAGATAGAGAA TACATTACTGACCTTTATTA
Product: membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 88; Mature: 88
Protein sequence:
>88_residues MLFKLIFLFAALTLHGVKRSPYPPTLLYSIPLILMGLMSGASFIMSLIGGAITLCVSFVYFSLLTHFSSGTQHYTIIILG GGLLIFFV
Sequences:
>Translated_88_residues MLFKLIFLFAALTLHGVKRSPYPPTLLYSIPLILMGLMSGASFIMSLIGGAITLCVSFVYFSLLTHFSSGTQHYTIIILG GGLLIFFV >Mature_88_residues MLFKLIFLFAALTLHGVKRSPYPPTLLYSIPLILMGLMSGASFIMSLIGGAITLCVSFVYFSLLTHFSSGTQHYTIIILG GGLLIFFV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9604; Mature: 9604
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFKLIFLFAALTLHGVKRSPYPPTLLYSIPLILMGLMSGASFIMSLIGGAITLCVSFVY CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FSLLTHFSSGTQHYTIIILGGGLLIFFV HHHHHHHCCCCCEEEEEEECCCEEEEEC >Mature Secondary Structure MLFKLIFLFAALTLHGVKRSPYPPTLLYSIPLILMGLMSGASFIMSLIGGAITLCVSFVY CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FSLLTHFSSGTQHYTIIILGGGLLIFFV HHHHHHHCCCCCEEEEEEECCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA