Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694883

Identifier: 209694883

GI number: 209694883

Start: 1472721

End: 1473107

Strand: Direct

Name: 209694883

Synonym: VSAL_I1354

Alternate gene names: NA

Gene position: 1472721-1473107 (Clockwise)

Preceding gene: 209694882

Following gene: 209694885

Centisome position: 44.29

GC content: 39.79

Gene sequence:

>387_bases
ATGAGCCAACTAGATCAACAAACAATAGAAAAAATCGTAAATTCTCATGAAGAAGAGCGTTTTACTTACTTTATGAAAGA
AGTTGTCGCTAATCGTGAAATTTGGATTTTGACTGATGAACACGGTTGTGTGATGTTGAATACCGAAGAAGAAGATTGCG
TTCCAGTGTGGCCAAACAAAGAATTTGCTGAAGCGTGGGCAACGGGCGAGTGGGATGTATGTAAAGCAGAATCTATCTCT
CTAAACAAATGGCACAGCCGTTGGACTACCGGTCTAGAAGACGATGAACTGGCCGTTGTTGTTTTCCCAAATCAAAACGA
AGAAGGGCAAGTGCTTTTCCCTGATGAATTCGATTTTGAATTAACAAAACAAGAAAGAAAGCGTTAA

Upstream 100 bases:

>100_bases
ATTTATGCCTTACTCTAATCGATTTTTCCTACGCAATTATCTGCTCAACTACTTATCCAGATTGGTATAATATAATCTTT
CCCACTGATAGGAATTGGTA

Downstream 100 bases:

>100_bases
TTTTTTATCTGCCTAGATATTAAATACAGAGACATATAAAAATGGCGACTCAAATAAGAGTCGCCATTTTTTGTATTTTC
GCTAAACAAGCGTGTGAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MSQLDQQTIEKIVNSHEEERFTYFMKEVVANREIWILTDEHGCVMLNTEEEDCVPVWPNKEFAEAWATGEWDVCKAESIS
LNKWHSRWTTGLEDDELAVVVFPNQNEEGQVLFPDEFDFELTKQERKR

Sequences:

>Translated_128_residues
MSQLDQQTIEKIVNSHEEERFTYFMKEVVANREIWILTDEHGCVMLNTEEEDCVPVWPNKEFAEAWATGEWDVCKAESIS
LNKWHSRWTTGLEDDELAVVVFPNQNEEGQVLFPDEFDFELTKQERKR
>Mature_127_residues
SQLDQQTIEKIVNSHEEERFTYFMKEVVANREIWILTDEHGCVMLNTEEEDCVPVWPNKEFAEAWATGEWDVCKAESISL
NKWHSRWTTGLEDDELAVVVFPNQNEEGQVLFPDEFDFELTKQERKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15170; Mature: 15039

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLDQQTIEKIVNSHEEERFTYFMKEVVANREIWILTDEHGCVMLNTEEEDCVPVWPNK
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCEECCCCH
EFAEAWATGEWDVCKAESISLNKWHSRWTTGLEDDELAVVVFPNQNEEGQVLFPDEFDFE
HHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCEECCCCCCCE
LTKQERKR
ECHHHCCC
>Mature Secondary Structure 
SQLDQQTIEKIVNSHEEERFTYFMKEVVANREIWILTDEHGCVMLNTEEEDCVPVWPNK
CCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCEECCCCH
EFAEAWATGEWDVCKAESISLNKWHSRWTTGLEDDELAVVVFPNQNEEGQVLFPDEFDFE
HHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCEECCCCCCCE
LTKQERKR
ECHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA