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The map label for this gene is yjiR [C]

Identifier: 209694840

GI number: 209694840

Start: 1417791

End: 1419131

Strand: Direct

Name: yjiR [C]

Synonym: VSAL_I1306

Alternate gene names: 209694840

Gene position: 1417791-1419131 (Clockwise)

Preceding gene: 209694835

Following gene: 209694841

Centisome position: 42.64

GC content: 36.32

Gene sequence:

>1341_bases
ATGAGTGAAAATAAATTTAAGCAAATAGCGGAGACTATTGAGTCACGAATTATTGACGGTATATATCCCCCAAACTTTAA
ACTGCCTCCTCATAGAGAGCTAGCTAATGAGTTATCGACAACACCTGCTACTATCGCGAAAGCTTATAAATTGCTTGCTG
ATAAAAAGAGAGTTGAACCATTTGTAGGCAGAGGAACCTTTGTATGTGGTGAGTCACGTTTAGATCAAGTGATTCAATCT
TCTGAAGACAACGGAGACTATAATTTTTCAATATTACAACCTTGCTTGAGCCATAATGTTCAACCGTTAAAAGAAGCATT
AGAGAAAGCAGCTAGTCAATTAACCTCAGATCTCATTGGATATACGGAGCACTCAGGGCATGAAACTCACCGTTTAGCAG
GTGTGAATTGGGCGAAAGAATATGGTTTAGTTGGTGGTAATGCCAATAACACTTTACTGACAAATGGCGCACAACATGCT
CTTTCTTTATTGATTGAGGTATTGACTAAGCCCGGTGATACCATTGCTATTGAAGCGTTGGTTTATCCCGGAATTATTGC
TATTGCGAGTTTGCTTGGTAGGCAAATCGTGGGTGTAGCGCTTGATGACAAAGGGATGTCCCCAACAGATTTAACTAGAG
TTATTAAACAGCATAAACCTAAATTAGTCATCGTTATTCCTAGCTTTCAAAATCCAACTGGTATAACGATGCCCACAGCT
CGTCGTAAAGAAATTGCAGACGTCATTATTAAGAATAATATTTATCTAATTGAAGATGATATTTATGGTTTTTTGAATGA
AAAAGTTATTCCTGCTATTTGTAATTGGTTACCGGAACAAGGCTTTCATATTACAAGTTTATCTAAAGCAATAAGCCCTG
CAATTCGATGTGGTTTTGTTAAGGTTCCTGATATACATATTTCAAATGTTGGTGCTCAAATTCGAGCCAGTATTTGGCTA
TCTTCTCCAATTAATTACATTGCTGCGAGTGATATGATTGAAACAGGAGTCGCTTATCAACTAGCAAACTATCAACGTGA
GATAGCTTTACGCCGACAAGAGATGGTATATGAGGTTTTTGGCAATAGTTATTTAAAAACAGATGGTTATCATGTTTGGT
TGCCGCTTATGGCGCATTGGCAACAAGATCAATTTGTTTTAGAGGCAAAAAATCGAGGATTAATTGTAAGTAGTGGTGGC
TATTTTAATGCTACAGATACGCACTTGAACCATGTTCGTTTATCTTTAATGTCAATTAATTCAGATGAGAAATTTAAAAA
GGGTTTAAAAGCATTATTTGAACTTCTAAATTCAAACAATAAAACCATGTTTCCATTTTAA

Upstream 100 bases:

>100_bases
CATATGTCAATTAAATTGTATTAAAGTATTTCATTCATAATCTGCTAGTAATAAACTAGGTCATAATGTTGTCATATTTG
GATTTAGTGCCGGTGAGTAG

Downstream 100 bases:

>100_bases
AGAGGCTAGGATACCTATGAGTTTAAATACGCTAAAATTAGATCTTATTCATGTTGAGCCACTCACGGGGGGATTAACTA
ATGCCTGTTTAAAAGTAGAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MSENKFKQIAETIESRIIDGIYPPNFKLPPHRELANELSTTPATIAKAYKLLADKKRVEPFVGRGTFVCGESRLDQVIQS
SEDNGDYNFSILQPCLSHNVQPLKEALEKAASQLTSDLIGYTEHSGHETHRLAGVNWAKEYGLVGGNANNTLLTNGAQHA
LSLLIEVLTKPGDTIAIEALVYPGIIAIASLLGRQIVGVALDDKGMSPTDLTRVIKQHKPKLVIVIPSFQNPTGITMPTA
RRKEIADVIIKNNIYLIEDDIYGFLNEKVIPAICNWLPEQGFHITSLSKAISPAIRCGFVKVPDIHISNVGAQIRASIWL
SSPINYIAASDMIETGVAYQLANYQREIALRRQEMVYEVFGNSYLKTDGYHVWLPLMAHWQQDQFVLEAKNRGLIVSSGG
YFNATDTHLNHVRLSLMSINSDEKFKKGLKALFELLNSNNKTMFPF

Sequences:

>Translated_446_residues
MSENKFKQIAETIESRIIDGIYPPNFKLPPHRELANELSTTPATIAKAYKLLADKKRVEPFVGRGTFVCGESRLDQVIQS
SEDNGDYNFSILQPCLSHNVQPLKEALEKAASQLTSDLIGYTEHSGHETHRLAGVNWAKEYGLVGGNANNTLLTNGAQHA
LSLLIEVLTKPGDTIAIEALVYPGIIAIASLLGRQIVGVALDDKGMSPTDLTRVIKQHKPKLVIVIPSFQNPTGITMPTA
RRKEIADVIIKNNIYLIEDDIYGFLNEKVIPAICNWLPEQGFHITSLSKAISPAIRCGFVKVPDIHISNVGAQIRASIWL
SSPINYIAASDMIETGVAYQLANYQREIALRRQEMVYEVFGNSYLKTDGYHVWLPLMAHWQQDQFVLEAKNRGLIVSSGG
YFNATDTHLNHVRLSLMSINSDEKFKKGLKALFELLNSNNKTMFPF
>Mature_445_residues
SENKFKQIAETIESRIIDGIYPPNFKLPPHRELANELSTTPATIAKAYKLLADKKRVEPFVGRGTFVCGESRLDQVIQSS
EDNGDYNFSILQPCLSHNVQPLKEALEKAASQLTSDLIGYTEHSGHETHRLAGVNWAKEYGLVGGNANNTLLTNGAQHAL
SLLIEVLTKPGDTIAIEALVYPGIIAIASLLGRQIVGVALDDKGMSPTDLTRVIKQHKPKLVIVIPSFQNPTGITMPTAR
RKEIADVIIKNNIYLIEDDIYGFLNEKVIPAICNWLPEQGFHITSLSKAISPAIRCGFVKVPDIHISNVGAQIRASIWLS
SPINYIAASDMIETGVAYQLANYQREIALRRQEMVYEVFGNSYLKTDGYHVWLPLMAHWQQDQFVLEAKNRGLIVSSGGY
FNATDTHLNHVRLSLMSINSDEKFKKGLKALFELLNSNNKTMFPF

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=261, Percent_Identity=26.4367816091954, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI33469970, Length=261, Percent_Identity=26.4367816091954, Blast_Score=88, Evalue=2e-17,
Organism=Escherichia coli, GI1790797, Length=466, Percent_Identity=22.9613733905579, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787710, Length=474, Percent_Identity=24.0506329113924, Blast_Score=100, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6321236, Length=187, Percent_Identity=27.807486631016, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 49570; Mature: 49438

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENKFKQIAETIESRIIDGIYPPNFKLPPHRELANELSTTPATIAKAYKLLADKKRVEP
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCH
FVGRGTFVCGESRLDQVIQSSEDNGDYNFSILQPCLSHNVQPLKEALEKAASQLTSDLIG
HHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
YTEHSGHETHRLAGVNWAKEYGLVGGNANNTLLTNGAQHALSLLIEVLTKPGDTIAIEAL
CCCCCCCCHHHCCCCCHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCEEEEHHH
VYPGIIAIASLLGRQIVGVALDDKGMSPTDLTRVIKQHKPKLVIVIPSFQNPTGITMPTA
HHCCHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCH
RRKEIADVIIKNNIYLIEDDIYGFLNEKVIPAICNWLPEQGFHITSLSKAISPAIRCGFV
HHHHHHHHHEECCEEEEECHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEE
KVPDIHISNVGAQIRASIWLSSPINYIAASDMIETGVAYQLANYQREIALRRQEMVYEVF
ECCCEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GNSYLKTDGYHVWLPLMAHWQQDQFVLEAKNRGLIVSSGGYFNATDTHLNHVRLSLMSIN
CCCEEECCCCEEEEEHHHCCCCCCEEEEECCCEEEEECCCCCCCCCCHHHHEEEEEEECC
SDEKFKKGLKALFELLNSNNKTMFPF
CHHHHHHHHHHHHHHHCCCCCEECCC
>Mature Secondary Structure 
SENKFKQIAETIESRIIDGIYPPNFKLPPHRELANELSTTPATIAKAYKLLADKKRVEP
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCH
FVGRGTFVCGESRLDQVIQSSEDNGDYNFSILQPCLSHNVQPLKEALEKAASQLTSDLIG
HHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
YTEHSGHETHRLAGVNWAKEYGLVGGNANNTLLTNGAQHALSLLIEVLTKPGDTIAIEAL
CCCCCCCCHHHCCCCCHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCEEEEHHH
VYPGIIAIASLLGRQIVGVALDDKGMSPTDLTRVIKQHKPKLVIVIPSFQNPTGITMPTA
HHCCHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCH
RRKEIADVIIKNNIYLIEDDIYGFLNEKVIPAICNWLPEQGFHITSLSKAISPAIRCGFV
HHHHHHHHHEECCEEEEECHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEE
KVPDIHISNVGAQIRASIWLSSPINYIAASDMIETGVAYQLANYQREIALRRQEMVYEVF
ECCCEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GNSYLKTDGYHVWLPLMAHWQQDQFVLEAKNRGLIVSSGGYFNATDTHLNHVRLSLMSIN
CCCEEECCCCEEEEEHHHCCCCCCEEEEECCCEEEEECCCCCCCCCCHHHHEEEEEEECC
SDEKFKKGLKALFELLNSNNKTMFPF
CHHHHHHHHHHHHHHHCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]