| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694357
Identifier: 209694357
GI number: 209694357
Start: 859448
End: 861244
Strand: Direct
Name: 209694357
Synonym: VSAL_I0773
Alternate gene names: NA
Gene position: 859448-861244 (Clockwise)
Preceding gene: 209694350
Following gene: 209694363
Centisome position: 25.85
GC content: 44.69
Gene sequence:
>1797_bases ATGTTGAGCCTGAGTAAAACGCAGAGAAATATGAAAGAGAAAACCAAGCGCAGTAATGACATCCCCATTTATACCCAAGA GCAAACACTCGCCTTGGGGTATTACTTACGTCAGTACGAAACTAAAGAGATCGCTGAGGAAACGAACGTCAATCCACGCA CCGTTCAGCAATGGATAGCCAAATTTGGGTGGAAGAAAATGCGCGATGATTCGCCGGTGGAATTAATGCTGCGCCAACGC ATTGCCTATTTGTTGTGGATTGATAGAAAACACGCTGAGCAGTTGGCTGAGCTTGAGATGTTACTTGAGCAAAAATACAA ACGAGACAGGGCGGCGGAGTACAAAAAAAGAAAAGCCAGTCATGCCGACGGTGGTGATGCACCGGCTCGAGGGCGACCAA GTAACAAAGTTAAAAATGACGTATCTGGGATCACGGCTGAGATGCTTTCTGAGTATTACGAGACGAAATATTTTCAATAT CAGAAAGACATTCATGCGCATAAAGGCGATGAGCGCATTAATGAGCAGCGATTTTATTTGAAGTCACGCCAAATTGGGTT AAGTGATTATTTCTCATTTGAGGCGTTTGAAGATGCGGTACTGACAGGGGATAACCAGGTCTTTATTTCCGCCTCTCGTA AGCAGGCTGAGATATTCAAAAATTACATCAGAAAGTTCGCGCTGCAGATTGGCGGTGTGGAATTAAAAGGCAAAGACAGC ATTACGTTGAGCAATGGCGCTGAGTTTCATTTCATGTCAACCAATGTGTTTACCAGTCAGGGCTTTAACGGTCATATGTA TTATGACGAAGTTTTTTGGATGCCTAATTTTCAACGATTGGATGATTATGCGGGTGGAATGTCCATCCAGGCACAGTATC GAACTACGTACTTATCAACACCGTCATCAACGGCCCACGAAGCGTACCCTAAATGGACGGGACCAAAAGACAAAGGGATT GATATCAGCCACAAAGCCCTTAAAAAAGGGGCAATGGGTGTGGATGGCGTTTTCCGTCAAATGATCACGGTGGATGATGC CATCAAAGGAGGCGCGACCTTCTTTAATATGGATAAGTTACGCCGTAAATACCCGATAAAAAGTATTTTTGATAACGTGC TTCGTTGTGTGTTTTTAGATGATTCTGCGTCATTTTTCAATATCAAAGCCTTACTCGCCTGCAAAACCGATACGTCAAAA TGGAAAACCATTGATATGGGGAAATGTCGACCTGCAGGCGATCTTGAGGTGTTGGTCGGTTACGATCCAAGAGGGGGCGG ACAAGCGGATGGCTCGGATGACGCGGGGTTAGTTATTTCATTAAAACCCCTTAAAAAAGGCGGTGTGTTTCGATTCTTGG AGCGCATTAGATTGAAGGGCTCAAGTTATGAAGAGCAGGCCAAGGCCATTGAGGGCATCACTGAAAAATACCATGTTGTG CATTTAGAGATGGATACCAGTGGTGTTGGCTCCGCGGTGGCTGAGCTGGTCAGAAAGTTTTACCCAAGTTTAAAGGAAGT GAATTACAGCCCCGAAGTTAAACGGATGATGGCGTATAAAGCGCGTGAAATTATTAATGCGGGCCGCCTTCAATTTGATG ACAGTTGGGATGATGTGGTTCATTCCTTTTTGATGATACGACAACACACCACTAAGGCCAGCAATCAGATCACGATGATA TCAACGCGAACAAAACGAGGCTCTCATGCTGATTTAGCCTGGGCTGCAATGCATGTATTGCATTGGGAGCCGATTGACAT TTTAAATGACCATTCAACGACCGTTTCATTCTCATAG
Upstream 100 bases:
>100_bases AATGTAGTGAATCATTCCTCTCTTTAATAGCAGCCGTTTTTCTGTATCCCCCTATACAGAAAAACCAATGGCTGAGTCAC GCCCTTATTTGTAGCACTCT
Downstream 100 bases:
>100_bases GGGAGCGTATTTTGATTACATTTGACACACCAGAAAGCGTCATGAGCGCCGACATTCTTAATTATATGGAGGTGGCTCTT GTTAATGGATTGTATGAGCC
Product: bacteriophage terminase
Products: NA
Alternate protein names: Phage Terminase ATPase Subunit; Terminase; Phage-Related Terminase ATPase Subunit; Terminase Related Protein; Bacteriophage Terminase; Orf16-Like Phage Protein; Phage Terminase ATPase Subunit P; Mu-Like Prophage FluMu Protein Gp; Prophage; ATPase Subunit Of Terminase; Phage Gene; Terminase Subunit; Phage P2 Terminase ATPase Subunit GpP-Like Protein; Bacteriophage Terminase Large Subunit; Prophage Large Terminase Protein; Fels-2 Prophage Protein; Phage Terminase Subunit GpP; Terminase Large Subunit; DNA-Dependent ATPase Terminase Subunit; Terminase ATPase Subunit Bacteriophage Origin; Bacteriophage P2 GPP Capsid Protein; Phage Terminase Subunit; Phage-Related Terminase
Number of amino acids: Translated: 598; Mature: 598
Protein sequence:
>598_residues MLSLSKTQRNMKEKTKRSNDIPIYTQEQTLALGYYLRQYETKEIAEETNVNPRTVQQWIAKFGWKKMRDDSPVELMLRQR IAYLLWIDRKHAEQLAELEMLLEQKYKRDRAAEYKKRKASHADGGDAPARGRPSNKVKNDVSGITAEMLSEYYETKYFQY QKDIHAHKGDERINEQRFYLKSRQIGLSDYFSFEAFEDAVLTGDNQVFISASRKQAEIFKNYIRKFALQIGGVELKGKDS ITLSNGAEFHFMSTNVFTSQGFNGHMYYDEVFWMPNFQRLDDYAGGMSIQAQYRTTYLSTPSSTAHEAYPKWTGPKDKGI DISHKALKKGAMGVDGVFRQMITVDDAIKGGATFFNMDKLRRKYPIKSIFDNVLRCVFLDDSASFFNIKALLACKTDTSK WKTIDMGKCRPAGDLEVLVGYDPRGGGQADGSDDAGLVISLKPLKKGGVFRFLERIRLKGSSYEEQAKAIEGITEKYHVV HLEMDTSGVGSAVAELVRKFYPSLKEVNYSPEVKRMMAYKAREIINAGRLQFDDSWDDVVHSFLMIRQHTTKASNQITMI STRTKRGSHADLAWAAMHVLHWEPIDILNDHSTTVSFS
Sequences:
>Translated_598_residues MLSLSKTQRNMKEKTKRSNDIPIYTQEQTLALGYYLRQYETKEIAEETNVNPRTVQQWIAKFGWKKMRDDSPVELMLRQR IAYLLWIDRKHAEQLAELEMLLEQKYKRDRAAEYKKRKASHADGGDAPARGRPSNKVKNDVSGITAEMLSEYYETKYFQY QKDIHAHKGDERINEQRFYLKSRQIGLSDYFSFEAFEDAVLTGDNQVFISASRKQAEIFKNYIRKFALQIGGVELKGKDS ITLSNGAEFHFMSTNVFTSQGFNGHMYYDEVFWMPNFQRLDDYAGGMSIQAQYRTTYLSTPSSTAHEAYPKWTGPKDKGI DISHKALKKGAMGVDGVFRQMITVDDAIKGGATFFNMDKLRRKYPIKSIFDNVLRCVFLDDSASFFNIKALLACKTDTSK WKTIDMGKCRPAGDLEVLVGYDPRGGGQADGSDDAGLVISLKPLKKGGVFRFLERIRLKGSSYEEQAKAIEGITEKYHVV HLEMDTSGVGSAVAELVRKFYPSLKEVNYSPEVKRMMAYKAREIINAGRLQFDDSWDDVVHSFLMIRQHTTKASNQITMI STRTKRGSHADLAWAAMHVLHWEPIDILNDHSTTVSFS >Mature_598_residues MLSLSKTQRNMKEKTKRSNDIPIYTQEQTLALGYYLRQYETKEIAEETNVNPRTVQQWIAKFGWKKMRDDSPVELMLRQR IAYLLWIDRKHAEQLAELEMLLEQKYKRDRAAEYKKRKASHADGGDAPARGRPSNKVKNDVSGITAEMLSEYYETKYFQY QKDIHAHKGDERINEQRFYLKSRQIGLSDYFSFEAFEDAVLTGDNQVFISASRKQAEIFKNYIRKFALQIGGVELKGKDS ITLSNGAEFHFMSTNVFTSQGFNGHMYYDEVFWMPNFQRLDDYAGGMSIQAQYRTTYLSTPSSTAHEAYPKWTGPKDKGI DISHKALKKGAMGVDGVFRQMITVDDAIKGGATFFNMDKLRRKYPIKSIFDNVLRCVFLDDSASFFNIKALLACKTDTSK WKTIDMGKCRPAGDLEVLVGYDPRGGGQADGSDDAGLVISLKPLKKGGVFRFLERIRLKGSSYEEQAKAIEGITEKYHVV HLEMDTSGVGSAVAELVRKFYPSLKEVNYSPEVKRMMAYKAREIINAGRLQFDDSWDDVVHSFLMIRQHTTKASNQITMI STRTKRGSHADLAWAAMHVLHWEPIDILNDHSTTVSFS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68416; Mature: 68416
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSLSKTQRNMKEKTKRSNDIPIYTQEQTLALGYYLRQYETKEIAEETNVNPRTVQQWIA CCCCHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH KFGWKKMRDDSPVELMLRQRIAYLLWIDRKHAEQLAELEMLLEQKYKRDRAAEYKKRKAS HHCHHHCCCCCHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC HADGGDAPARGRPSNKVKNDVSGITAEMLSEYYETKYFQYQKDIHAHKGDERINEQRFYL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH KSRQIGLSDYFSFEAFEDAVLTGDNQVFISASRKQAEIFKNYIRKFALQIGGVELKGKDS HHCCCCHHHHHCHHHHHCCEEECCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEECCCCC ITLSNGAEFHFMSTNVFTSQGFNGHMYYDEVFWMPNFQRLDDYAGGMSIQAQYRTTYLST EEECCCCEEEEEECCEEECCCCCCCEEEEEEEECCCHHHHHHHCCCCEEEEEEEEEEECC PSSTAHEAYPKWTGPKDKGIDISHKALKKGAMGVDGVFRQMITVDDAIKGGATFFNMDKL CCCCHHHCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHH RRKYPIKSIFDNVLRCVFLDDSASFFNIKALLACKTDTSKWKTIDMGKCRPAGDLEVLVG HHHCCHHHHHHHHHEEEEECCCCCEEEEEEEEEECCCCCCCEEEECCCCCCCCCEEEEEE YDPRGGGQADGSDDAGLVISLKPLKKGGVFRFLERIRLKGSSYEEQAKAIEGITEKYHVV ECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEE HLEMDTSGVGSAVAELVRKFYPSLKEVNYSPEVKRMMAYKAREIINAGRLQFDDSWDDVV EEEECCCCHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHH HSFLMIRQHTTKASNQITMISTRTKRGSHADLAWAAMHVLHWEPIDILNDHSTTVSFS HHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCEEECC >Mature Secondary Structure MLSLSKTQRNMKEKTKRSNDIPIYTQEQTLALGYYLRQYETKEIAEETNVNPRTVQQWIA CCCCHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH KFGWKKMRDDSPVELMLRQRIAYLLWIDRKHAEQLAELEMLLEQKYKRDRAAEYKKRKAS HHCHHHCCCCCHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC HADGGDAPARGRPSNKVKNDVSGITAEMLSEYYETKYFQYQKDIHAHKGDERINEQRFYL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH KSRQIGLSDYFSFEAFEDAVLTGDNQVFISASRKQAEIFKNYIRKFALQIGGVELKGKDS HHCCCCHHHHHCHHHHHCCEEECCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEECCCCC ITLSNGAEFHFMSTNVFTSQGFNGHMYYDEVFWMPNFQRLDDYAGGMSIQAQYRTTYLST EEECCCCEEEEEECCEEECCCCCCCEEEEEEEECCCHHHHHHHCCCCEEEEEEEEEEECC PSSTAHEAYPKWTGPKDKGIDISHKALKKGAMGVDGVFRQMITVDDAIKGGATFFNMDKL CCCCHHHCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHH RRKYPIKSIFDNVLRCVFLDDSASFFNIKALLACKTDTSKWKTIDMGKCRPAGDLEVLVG HHHCCHHHHHHHHHEEEEECCCCCEEEEEEEEEECCCCCCCEEEECCCCCCCCCEEEEEE YDPRGGGQADGSDDAGLVISLKPLKKGGVFRFLERIRLKGSSYEEQAKAIEGITEKYHVV ECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEE HLEMDTSGVGSAVAELVRKFYPSLKEVNYSPEVKRMMAYKAREIINAGRLQFDDSWDDVV EEEECCCCHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHH HSFLMIRQHTTKASNQITMISTRTKRGSHADLAWAAMHVLHWEPIDILNDHSTTVSFS HHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA