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The map label for this gene is cph2 [H]

Identifier: 209694285

GI number: 209694285

Start: 781864

End: 783426

Strand: Reverse

Name: cph2 [H]

Synonym: VSAL_I0696

Alternate gene names: 209694285

Gene position: 783426-781864 (Counterclockwise)

Preceding gene: 209694286

Following gene: 209694284

Centisome position: 23.56

GC content: 37.43

Gene sequence:

>1563_bases
ATGATTGAAGTATCCATTGTTGCCTCAGAGTTAAGCCAATTAAAGCAACAATTAGATCAAACGCGCTTATCACACCGTGA
CACCTCGTTGAAATCACGCCGTGAAATTTTGTTGCTTAAACGCATTATTTTGCGATTTTGTGCTGCGTGTAAACATCATG
ATAGCGATCTGGATAAAGAAATAATTGAGCTTGCTCATGATATTGAACATATCGAAAACACCTCAGATTTAACCGTCCGT
ATTGCAACTTTTGAACGCTTAATTAACCGCTATCAATTAAATGTCCAAAAAGAACATTCAGTAATGGAAGAACATATTTC
TTATTGTGGCGAGACATTACAGCGTGTTGTTGGATTGCCGACAGGTTTAAAAAGAGACTTACGTAATCTACTTAGGCATC
CATCTCAAGATGGAACTAAACATATCCAACGTATTGTTCGCCTTATTGAGCTGTACGAAAGAGCAATTAAGTTTATTTCA
GCGGGTAGCGTCTCTTCCGAAATCAATGCCAATGAAATCATTGATGTTGATACTCAAGAGCAATTAAGTAATGAATTGCA
ACACCTGATCTCAGAGCTTGATTTCAATAACACCTCCGGTGAAGACCTCCTTGATATCAGAAATAAACTGCTCACTGGCG
TTGATGCTGTATCTCTAATTGATTTAGCCCTACAAACGTTACAACTCGTTCTTCAAGGCACAAATAAAGAACGTAAAGCA
TCCCAAGTCTTTGTTGGTGAGATGAACACTCAAGTGGCTCAAATCATAAAAACGAGTGAGCAAAACCAAGAACAAGGCCA
ATCTTATTTAGATCAACGTTCATTATTAAATGAAGAATATGGCCTTTTAATCAAACAAGCCGAAAACATTCTAGAAAGTA
AAATAAGCGCACAAGAACACAAAACAAAAATGTCGTTATTGCTCAATGAAATGAGCGATCTTGCAGAGCGAAATAAAGCC
ATGCAGGAGCGAGAAGCCGCACTAATAGAACGTCATGAATACACAACAAAAAAATTAAATAGCGTCTATCAAGAAACTCT
AGAATATCGTCGTCAATTAAACGATCAACAACAAAGAGTGTTTAAAGATCCATTAACCAATGTTTATAATCGCGCCGCTA
TGCATGAACGTTTAGATTTAGAATATAAACGCTGGGTCCGTCATCAACACTCTCTAGTATTAAGCATGATAGACATTGAT
CAGTTTAAACGTATCAATGAGCAATTTGGACACCTCGCTGGTGATAAAGCACTTAAAATCATCGCAAAAACCATAGAAAA
ACAAGTCTCGAATACTGATTTTGTCGCTCGATTCAGTGGTAAAGAGTTTTTAATCCTCTTTACAGAAACCACGAAAGAAG
AACGAGAAACGGTGCTTAAAGCGATCCAAGCTGCCATCGCAAAATTACCCTTCAAATTTAAAGGCAATCACGTTCAAGTC
ACGGTTTCTATTTGCAGTTCTGAATTTACCAACAGTGATATTCCTGAAAAAGTCATCGAACGATCAGTTCAAGCGCTATA
CAAACAAAAAACCAAAGGCACTCAACAACGCATTTGTGCATAA

Upstream 100 bases:

>100_bases
TTTTTAGTCTGTTAATTATAAATTTGTTATTATGAAGAGTATTGAATTTCTCAATATATACACTGCCACTTATTCTAATA
TGAGTTTTATGTAAGTTATT

Downstream 100 bases:

>100_bases
TTACCTTTTATATTGCCTACGATAAATACATAACCCTCTCACTTTTTTACTCTTTTTCTAGCTAAAGTCCCCATTGCTGT
GTAAGTTTATTATTCGAACA

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MIEVSIVASELSQLKQQLDQTRLSHRDTSLKSRREILLLKRIILRFCAACKHHDSDLDKEIIELAHDIEHIENTSDLTVR
IATFERLINRYQLNVQKEHSVMEEHISYCGETLQRVVGLPTGLKRDLRNLLRHPSQDGTKHIQRIVRLIELYERAIKFIS
AGSVSSEINANEIIDVDTQEQLSNELQHLISELDFNNTSGEDLLDIRNKLLTGVDAVSLIDLALQTLQLVLQGTNKERKA
SQVFVGEMNTQVAQIIKTSEQNQEQGQSYLDQRSLLNEEYGLLIKQAENILESKISAQEHKTKMSLLLNEMSDLAERNKA
MQEREAALIERHEYTTKKLNSVYQETLEYRRQLNDQQQRVFKDPLTNVYNRAAMHERLDLEYKRWVRHQHSLVLSMIDID
QFKRINEQFGHLAGDKALKIIAKTIEKQVSNTDFVARFSGKEFLILFTETTKEERETVLKAIQAAIAKLPFKFKGNHVQV
TVSICSSEFTNSDIPEKVIERSVQALYKQKTKGTQQRICA

Sequences:

>Translated_520_residues
MIEVSIVASELSQLKQQLDQTRLSHRDTSLKSRREILLLKRIILRFCAACKHHDSDLDKEIIELAHDIEHIENTSDLTVR
IATFERLINRYQLNVQKEHSVMEEHISYCGETLQRVVGLPTGLKRDLRNLLRHPSQDGTKHIQRIVRLIELYERAIKFIS
AGSVSSEINANEIIDVDTQEQLSNELQHLISELDFNNTSGEDLLDIRNKLLTGVDAVSLIDLALQTLQLVLQGTNKERKA
SQVFVGEMNTQVAQIIKTSEQNQEQGQSYLDQRSLLNEEYGLLIKQAENILESKISAQEHKTKMSLLLNEMSDLAERNKA
MQEREAALIERHEYTTKKLNSVYQETLEYRRQLNDQQQRVFKDPLTNVYNRAAMHERLDLEYKRWVRHQHSLVLSMIDID
QFKRINEQFGHLAGDKALKIIAKTIEKQVSNTDFVARFSGKEFLILFTETTKEERETVLKAIQAAIAKLPFKFKGNHVQV
TVSICSSEFTNSDIPEKVIERSVQALYKQKTKGTQQRICA
>Mature_520_residues
MIEVSIVASELSQLKQQLDQTRLSHRDTSLKSRREILLLKRIILRFCAACKHHDSDLDKEIIELAHDIEHIENTSDLTVR
IATFERLINRYQLNVQKEHSVMEEHISYCGETLQRVVGLPTGLKRDLRNLLRHPSQDGTKHIQRIVRLIELYERAIKFIS
AGSVSSEINANEIIDVDTQEQLSNELQHLISELDFNNTSGEDLLDIRNKLLTGVDAVSLIDLALQTLQLVLQGTNKERKA
SQVFVGEMNTQVAQIIKTSEQNQEQGQSYLDQRSLLNEEYGLLIKQAENILESKISAQEHKTKMSLLLNEMSDLAERNKA
MQEREAALIERHEYTTKKLNSVYQETLEYRRQLNDQQQRVFKDPLTNVYNRAAMHERLDLEYKRWVRHQHSLVLSMIDID
QFKRINEQFGHLAGDKALKIIAKTIEKQVSNTDFVARFSGKEFLILFTETTKEERETVLKAIQAAIAKLPFKFKGNHVQV
TVSICSSEFTNSDIPEKVIERSVQALYKQKTKGTQQRICA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=29.5180722891566, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1787802, Length=156, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1786584, Length=139, Percent_Identity=31.6546762589928, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082007, Length=107, Percent_Identity=33.6448598130841, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=28.125, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI87081881, Length=213, Percent_Identity=24.8826291079812, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788085, Length=96, Percent_Identity=37.5, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787816, Length=192, Percent_Identity=24.4791666666667, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1787056, Length=167, Percent_Identity=28.1437125748503, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI87081974, Length=91, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788381, Length=176, Percent_Identity=28.4090909090909, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 60011; Mature: 60011

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEVSIVASELSQLKQQLDQTRLSHRDTSLKSRREILLLKRIILRFCAACKHHDSDLDKE
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
IIELAHDIEHIENTSDLTVRIATFERLINRYQLNVQKEHSVMEEHISYCGETLQRVVGLP
HHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
TGLKRDLRNLLRHPSQDGTKHIQRIVRLIELYERAIKFISAGSVSSEINANEIIDVDTQE
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCHH
QLSNELQHLISELDFNNTSGEDLLDIRNKLLTGVDAVSLIDLALQTLQLVLQGTNKERKA
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SQVFVGEMNTQVAQIIKTSEQNQEQGQSYLDQRSLLNEEYGLLIKQAENILESKISAQEH
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTKMSLLLNEMSDLAERNKAMQEREAALIERHEYTTKKLNSVYQETLEYRRQLNDQQQRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
FKDPLTNVYNRAAMHERLDLEYKRWVRHQHSLVLSMIDIDQFKRINEQFGHLAGDKALKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
IAKTIEKQVSNTDFVARFSGKEFLILFTETTKEERETVLKAIQAAIAKLPFKFKGNHVQV
HHHHHHHHHCCCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEECCCEEEE
TVSICSSEFTNSDIPEKVIERSVQALYKQKTKGTQQRICA
EEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCC
>Mature Secondary Structure
MIEVSIVASELSQLKQQLDQTRLSHRDTSLKSRREILLLKRIILRFCAACKHHDSDLDKE
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
IIELAHDIEHIENTSDLTVRIATFERLINRYQLNVQKEHSVMEEHISYCGETLQRVVGLP
HHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
TGLKRDLRNLLRHPSQDGTKHIQRIVRLIELYERAIKFISAGSVSSEINANEIIDVDTQE
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCHH
QLSNELQHLISELDFNNTSGEDLLDIRNKLLTGVDAVSLIDLALQTLQLVLQGTNKERKA
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SQVFVGEMNTQVAQIIKTSEQNQEQGQSYLDQRSLLNEEYGLLIKQAENILESKISAQEH
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTKMSLLLNEMSDLAERNKAMQEREAALIERHEYTTKKLNSVYQETLEYRRQLNDQQQRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
FKDPLTNVYNRAAMHERLDLEYKRWVRHQHSLVLSMIDIDQFKRINEQFGHLAGDKALKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
IAKTIEKQVSNTDFVARFSGKEFLILFTETTKEERETVLKAIQAAIAKLPFKFKGNHVQV
HHHHHHHHHCCCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEECCCEEEE
TVSICSSEFTNSDIPEKVIERSVQALYKQKTKGTQQRICA
EEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]