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The map label for this gene is xni [H]

Identifier: 209694283

GI number: 209694283

Start: 779521

End: 780294

Strand: Reverse

Name: xni [H]

Synonym: VSAL_I0694

Alternate gene names: 209694283

Gene position: 780294-779521 (Counterclockwise)

Preceding gene: 209694284

Following gene: 209694279

Centisome position: 23.47

GC content: 41.09

Gene sequence:

>774_bases
ATGGCAATTCATCTGGTTATTATCGATGCTCTCAATCTCATTCGTCGTGTTCATTCAGCACAACCAAACCAAGATGATAT
CCAAGCAGTAGTGACAACGACAGGTCGTACAATTAATCGTATTTTAAAAGAAACCGAACCGACTCATATCATTGCCGTCT
TTGATCACCACCTTCAAGACCGGGGCTGGCGAGCCGAAGTATTGCCTAAATACAAAGAAGACAGAAAACCAATGCCTGAA
GCACTGCAAAAAGGCATGGATGCAATTCAAGAATCTTGGTGGAAACTGGGTATTGACTCTCTTTTATCTGATGGAGATGA
AGCTGACGATTTAGTCGCAACACTTGCCAATAAAGTCGCCTCTCGCAACGAACAAGTCACAATAGTCTCTACAGACAAAG
GTTATTGCCAGTTACTTTCCCCGACGCTACGAATTCGTGATTATTTCCAACATCGTTGGTTAGATGAACCTTTTATTGAA
AAAGAGTTTGGACTAAAGCCGGAACAATTGGCCGATTACTGGGGATTAGCTGGAATTAGCTCAAGTAAAATAACAGGGAT
CCCAGGGATAGGCCCTAAAGCAGCATTAGAAATTTTGACTCAATTTCCGACAATTGAAGCGGCCAATGAATCCGATGAAT
TACCAAAGAAATACCGTAAGAAATTTGATGAGTATTACAATACCGCGATTCTATGTCGAAAAGTCGCCGGTTTAAGAACC
GATATTGAACTTGGATTTAACTTACAAGATATACGATATGAGAAGCCTGAGTAG

Upstream 100 bases:

>100_bases
GAAATCGTCGTTGATTAGGGGTGGAATCTCACCTCATCACTAACGTACAATAAGAGGCCTACTAGGTCTCTTTCTTTTTA
TACATAGGAATGAATACGTT

Downstream 100 bases:

>100_bases
TTGAAATTAAAACAATGAATATAATGTGCTTTTCTACAAAAGAAAGATGGCTGTATTTGATGTGGTTATTACGTCGATGA
CAAACAGTTTTTTTGCGCCA

Product: exonuclease IX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MAIHLVIIDALNLIRRVHSAQPNQDDIQAVVTTTGRTINRILKETEPTHIIAVFDHHLQDRGWRAEVLPKYKEDRKPMPE
ALQKGMDAIQESWWKLGIDSLLSDGDEADDLVATLANKVASRNEQVTIVSTDKGYCQLLSPTLRIRDYFQHRWLDEPFIE
KEFGLKPEQLADYWGLAGISSSKITGIPGIGPKAALEILTQFPTIEAANESDELPKKYRKKFDEYYNTAILCRKVAGLRT
DIELGFNLQDIRYEKPE

Sequences:

>Translated_257_residues
MAIHLVIIDALNLIRRVHSAQPNQDDIQAVVTTTGRTINRILKETEPTHIIAVFDHHLQDRGWRAEVLPKYKEDRKPMPE
ALQKGMDAIQESWWKLGIDSLLSDGDEADDLVATLANKVASRNEQVTIVSTDKGYCQLLSPTLRIRDYFQHRWLDEPFIE
KEFGLKPEQLADYWGLAGISSSKITGIPGIGPKAALEILTQFPTIEAANESDELPKKYRKKFDEYYNTAILCRKVAGLRT
DIELGFNLQDIRYEKPE
>Mature_256_residues
AIHLVIIDALNLIRRVHSAQPNQDDIQAVVTTTGRTINRILKETEPTHIIAVFDHHLQDRGWRAEVLPKYKEDRKPMPEA
LQKGMDAIQESWWKLGIDSLLSDGDEADDLVATLANKVASRNEQVTIVSTDKGYCQLLSPTLRIRDYFQHRWLDEPFIEK
EFGLKPEQLADYWGLAGISSSKITGIPGIGPKAALEILTQFPTIEAANESDELPKKYRKKFDEYYNTAILCRKVAGLRTD
IELGFNLQDIRYEKPE

Specific function: May have a role in processing of nucleic acids. It is probably not an exonuclease; metal-binding residues found in paralogs are missing [H]

COG id: COG0258

COG function: function code L; 5'-3' exonuclease (including N-terminal domain of PolI)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 5'-3' exonuclease domain [H]

Homologues:

Organism=Escherichia coli, GI226510970, Length=253, Percent_Identity=51.7786561264822, Blast_Score=273, Evalue=1e-74,
Organism=Escherichia coli, GI1790294, Length=264, Percent_Identity=25, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020046
- InterPro:   IPR020045
- InterPro:   IPR020047
- InterPro:   IPR008918
- InterPro:   IPR022895 [H]

Pfam domain/function: PF01367 5_3_exonuc; PF02739 5_3_exonuc_N [H]

EC number: 3.1.11.- [C]

Molecular weight: Translated: 29285; Mature: 29153

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIHLVIIDALNLIRRVHSAQPNQDDIQAVVTTTGRTINRILKETEPTHIIAVFDHHLQD
CEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEHHHHHC
RGWRAEVLPKYKEDRKPMPEALQKGMDAIQESWWKLGIDSLLSDGDEADDLVATLANKVA
CCCCHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHH
SRNEQVTIVSTDKGYCQLLSPTLRIRDYFQHRWLDEPFIEKEFGLKPEQLADYWGLAGIS
CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCCCC
SSKITGIPGIGPKAALEILTQFPTIEAANESDELPKKYRKKFDEYYNTAILCRKVAGLRT
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DIELGFNLQDIRYEKPE
CHHCCCCHHHCCCCCCC
>Mature Secondary Structure 
AIHLVIIDALNLIRRVHSAQPNQDDIQAVVTTTGRTINRILKETEPTHIIAVFDHHLQD
EEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEHHHHHC
RGWRAEVLPKYKEDRKPMPEALQKGMDAIQESWWKLGIDSLLSDGDEADDLVATLANKVA
CCCCHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHH
SRNEQVTIVSTDKGYCQLLSPTLRIRDYFQHRWLDEPFIEKEFGLKPEQLADYWGLAGIS
CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCCCC
SSKITGIPGIGPKAALEILTQFPTIEAANESDELPKKYRKKFDEYYNTAILCRKVAGLRT
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DIELGFNLQDIRYEKPE
CHHCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA