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The map label for this gene is yfjD [H]

Identifier: 209694237

GI number: 209694237

Start: 718895

End: 720166

Strand: Reverse

Name: yfjD [H]

Synonym: VSAL_I0646

Alternate gene names: 209694237

Gene position: 720166-718895 (Counterclockwise)

Preceding gene: 209694238

Following gene: 209694223

Centisome position: 21.66

GC content: 38.84

Gene sequence:

>1272_bases
TTGGATGACATATCAACCGGCGCCCTGTTTACGATTTTAGCTGTACTTATTATTGCATCTGGTTATTTTTCAAGCTCTGA
AACCGGCATGATGTCTTTAAATCGATATCGCTTAAAACACTTATCCAATCAAGGTCATAAGGGGGCACAGCGTGTTGAGA
AATTACTAAGTCGCCCAGACCGACTTATTGGTTTAATTCTAATAGGCAACAACCTCGTTAATATTCTCGCTTCTGCTATC
GCGACTATTTTAGGTATGCGCTTATACGGGGATTACGGTGTTGCAATTGCTACCGGTGTTCTGACTCTCGTCATTCTAGT
CTTTGCCGAAGTAACACCAAAAACACTTGCAGCAATGTATCCTGAGCGAGTGGCTTACAGCAGCAGTATCCTACTCAATA
TTCTAATGAAAATTTTATCTCCATTAGTCATCCTAGTAAACCTGATTACTAATGGCTTTCTAAAACTTCTTGGCCTTGGT
ACAAACCACTCTCACAAAGACAACCTTAGTTCAGAAGAATTACGAACGGTTGTTCATGAGGCTGGAGGGCTTATCCCACG
CCGCCACCAAGATATGCTTATTTCTATTTTAGATTTAGAACATGTCACTGTTAATGACATCATGGTGCCTCGCAGCGAAA
TTACAGGCATTGATATTAATGACGATTGGAAATCCATTTCACGCCAACTGGCTCACTCGCCACACGGTCGTATCGTTCTT
TATCGTGACCAAATTGATGAAGTAGTGGGAATGCTTCGTTTACGCGAATCCTATCGCTTAATGCTTGAAAAAAATGAATT
TACAAAAGAAACATTATTAAGGGCAGCTGATGAAATTTATTTCATTCCCGAAGCAACACCTTTAAATATTCAACTATTAA
AATTTCAGCGTAATAAAGAGCGTATTGGACTAATCGTAGATGAATACGGTGATATTCAAGGTTTGATTACTTTAGAAGAC
ATACTAGAAGAAATTGTTGGTGAGTTTACTACGTCAATGGCACCAAGTTTAACCGAAGAGATCACACCTCAACCTGACGG
CAGTTTCATGATTGAAGGCAGCGCTAATATTCGAGATATTAATAAAGGCCTGAAATGGAGTTTACCAACAGATGGTCCAA
GAACATTAAATGGGCTGATACTCGAACACCTAGAAGAAATTCCGGGCACTCAAATCAAAGTAAATATAGAACATCATCAA
ATGGAAATTATCGCAGTAGAAGAGAACAAAATTAATTTGGTTAAAGTATTCCCTAGTAGCGATAATAATTAG

Upstream 100 bases:

>100_bases
CAAGACTTCTAGCTCACTTTTCAAGATCAAATTTGACATATCAAGCACTGATATTGATAAATAACCTTTACATTGTATTT
TTCACTGAGGATCAAGTCAC

Downstream 100 bases:

>100_bases
CTTATATACAAGCACAAAAAAGCCCGTATTAGATTTCTAATGCGGGCTTTTTAAATTCGAAATGAAATTAATCTACAGAT
AGTTCTTTAAGCATTGACTC

Product: transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MDDISTGALFTILAVLIIASGYFSSSETGMMSLNRYRLKHLSNQGHKGAQRVEKLLSRPDRLIGLILIGNNLVNILASAI
ATILGMRLYGDYGVAIATGVLTLVILVFAEVTPKTLAAMYPERVAYSSSILLNILMKILSPLVILVNLITNGFLKLLGLG
TNHSHKDNLSSEELRTVVHEAGGLIPRRHQDMLISILDLEHVTVNDIMVPRSEITGIDINDDWKSISRQLAHSPHGRIVL
YRDQIDEVVGMLRLRESYRLMLEKNEFTKETLLRAADEIYFIPEATPLNIQLLKFQRNKERIGLIVDEYGDIQGLITLED
ILEEIVGEFTTSMAPSLTEEITPQPDGSFMIEGSANIRDINKGLKWSLPTDGPRTLNGLILEHLEEIPGTQIKVNIEHHQ
MEIIAVEENKINLVKVFPSSDNN

Sequences:

>Translated_423_residues
MDDISTGALFTILAVLIIASGYFSSSETGMMSLNRYRLKHLSNQGHKGAQRVEKLLSRPDRLIGLILIGNNLVNILASAI
ATILGMRLYGDYGVAIATGVLTLVILVFAEVTPKTLAAMYPERVAYSSSILLNILMKILSPLVILVNLITNGFLKLLGLG
TNHSHKDNLSSEELRTVVHEAGGLIPRRHQDMLISILDLEHVTVNDIMVPRSEITGIDINDDWKSISRQLAHSPHGRIVL
YRDQIDEVVGMLRLRESYRLMLEKNEFTKETLLRAADEIYFIPEATPLNIQLLKFQRNKERIGLIVDEYGDIQGLITLED
ILEEIVGEFTTSMAPSLTEEITPQPDGSFMIEGSANIRDINKGLKWSLPTDGPRTLNGLILEHLEEIPGTQIKVNIEHHQ
MEIIAVEENKINLVKVFPSSDNN
>Mature_423_residues
MDDISTGALFTILAVLIIASGYFSSSETGMMSLNRYRLKHLSNQGHKGAQRVEKLLSRPDRLIGLILIGNNLVNILASAI
ATILGMRLYGDYGVAIATGVLTLVILVFAEVTPKTLAAMYPERVAYSSSILLNILMKILSPLVILVNLITNGFLKLLGLG
TNHSHKDNLSSEELRTVVHEAGGLIPRRHQDMLISILDLEHVTVNDIMVPRSEITGIDINDDWKSISRQLAHSPHGRIVL
YRDQIDEVVGMLRLRESYRLMLEKNEFTKETLLRAADEIYFIPEATPLNIQLLKFQRNKERIGLIVDEYGDIQGLITLED
ILEEIVGEFTTSMAPSLTEEITPQPDGSFMIEGSANIRDINKGLKWSLPTDGPRTLNGLILEHLEEIPGTQIKVNIEHHQ
MEIIAVEENKINLVKVFPSSDNN

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=380, Percent_Identity=23.6842105263158, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI94681046, Length=334, Percent_Identity=24.5508982035928, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI40068055, Length=332, Percent_Identity=24.0963855421687, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI40068053, Length=332, Percent_Identity=24.0963855421687, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI145693175, Length=398, Percent_Identity=66.3316582914573, Blast_Score=561, Evalue=1e-161,
Organism=Escherichia coli, GI1790664, Length=419, Percent_Identity=23.6276849642005, Blast_Score=141, Evalue=8e-35,
Organism=Escherichia coli, GI1786879, Length=269, Percent_Identity=24.907063197026, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082033, Length=241, Percent_Identity=26.5560165975104, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1788119, Length=247, Percent_Identity=26.3157894736842, Blast_Score=80, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6324512, Length=343, Percent_Identity=24.198250728863, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 47170; Mature: 47170

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDISTGALFTILAVLIIASGYFSSSETGMMSLNRYRLKHLSNQGHKGAQRVEKLLSRPD
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
RLIGLILIGNNLVNILASAIATILGMRLYGDYGVAIATGVLTLVILVFAEVTPKTLAAMY
CEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHC
PERVAYSSSILLNILMKILSPLVILVNLITNGFLKLLGLGTNHSHKDNLSSEELRTVVHE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
AGGLIPRRHQDMLISILDLEHVTVNDIMVPRSEITGIDINDDWKSISRQLAHSPHGRIVL
HCCCCCCCCHHHHHHHHHCCCEEECCEECCHHHCCCCCCCCHHHHHHHHHHCCCCCCEEE
YRDQIDEVVGMLRLRESYRLMLEKNEFTKETLLRAADEIYFIPEATPLNIQLLKFQRNKE
EHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCEEECCCCCCCEEEEEEEECCCC
RIGLIVDEYGDIQGLITLEDILEEIVGEFTTSMAPSLTEEITPQPDGSFMIEGSANIRDI
CEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCHHHH
NKGLKWSLPTDGPRTLNGLILEHLEEIPGTQIKVNIEHHQMEIIAVEENKINLVKVFPSS
CCCCEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEECCCEEEEEEECCC
DNN
CCC
>Mature Secondary Structure
MDDISTGALFTILAVLIIASGYFSSSETGMMSLNRYRLKHLSNQGHKGAQRVEKLLSRPD
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
RLIGLILIGNNLVNILASAIATILGMRLYGDYGVAIATGVLTLVILVFAEVTPKTLAAMY
CEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHC
PERVAYSSSILLNILMKILSPLVILVNLITNGFLKLLGLGTNHSHKDNLSSEELRTVVHE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
AGGLIPRRHQDMLISILDLEHVTVNDIMVPRSEITGIDINDDWKSISRQLAHSPHGRIVL
HCCCCCCCCHHHHHHHHHCCCEEECCEECCHHHCCCCCCCCHHHHHHHHHHCCCCCCEEE
YRDQIDEVVGMLRLRESYRLMLEKNEFTKETLLRAADEIYFIPEATPLNIQLLKFQRNKE
EHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCEEECCCCCCCEEEEEEEECCCC
RIGLIVDEYGDIQGLITLEDILEEIVGEFTTSMAPSLTEEITPQPDGSFMIEGSANIRDI
CEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCHHHH
NKGLKWSLPTDGPRTLNGLILEHLEEIPGTQIKVNIEHHQMEIIAVEENKINLVKVFPSS
CCCCEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEECCCEEEEEEECCC
DNN
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]