Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694219
Identifier: 209694219
GI number: 209694219
Start: 693819
End: 694052
Strand: Reverse
Name: 209694219
Synonym: VSAL_I0628
Alternate gene names: NA
Gene position: 694052-693819 (Counterclockwise)
Preceding gene: 209694220
Following gene: 209694216
Centisome position: 20.87
GC content: 35.9
Gene sequence:
>234_bases ATGACACAGCAAAATAACCCGCTTCACGGTGTAACCCTGCAAGGGATCTTAACTGAATTAGTTGAGCACTATGGGTGGGA AGAATTAAGCTACATGATAAACATCAATTGTTTTAAATCAGATCCAACAATTAAATCCAGCTTAAAGTTTTTACGTAAAA CAGAATGGGCACGAGTTCGTGTTGAAAATGTGTACTTAAAACTTCAACGCCATAAAGAAAGAGCATCAAAATAA
Upstream 100 bases:
>100_bases CATCATAAAAAGACAAGTGGGAGCCTAAGTGCTCCCATTTTTTATGACTACTCTAGCCAGAATGTTATACTTACATTAAC TCAAGAAAAATGGCGATATT
Downstream 100 bases:
>100_bases ATAGACGATAGAGAGTGTCTCTGTATCTACGTTATTTAATCGCTTAAAAATAAAAAGCCCCGTAAGTTTTCACTTACGGG GCTTTTTTAATTAAAGAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 77; Mature: 76
Protein sequence:
>77_residues MTQQNNPLHGVTLQGILTELVEHYGWEELSYMININCFKSDPTIKSSLKFLRKTEWARVRVENVYLKLQRHKERASK
Sequences:
>Translated_77_residues MTQQNNPLHGVTLQGILTELVEHYGWEELSYMININCFKSDPTIKSSLKFLRKTEWARVRVENVYLKLQRHKERASK >Mature_76_residues TQQNNPLHGVTLQGILTELVEHYGWEELSYMININCFKSDPTIKSSLKFLRKTEWARVRVENVYLKLQRHKERASK
Specific function: Unknown
COG id: COG4628
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9147; Mature: 9015
Theoretical pI: Translated: 9.94; Mature: 9.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQQNNPLHGVTLQGILTELVEHYGWEELSYMININCFKSDPTIKSSLKFLRKTEWARVR CCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH VENVYLKLQRHKERASK HHHHHHHHHHHHHHCCC >Mature Secondary Structure TQQNNPLHGVTLQGILTELVEHYGWEELSYMININCFKSDPTIKSSLKFLRKTEWARVR CCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH VENVYLKLQRHKERASK HHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA