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The map label for this gene is rbfA

Identifier: 209694191

GI number: 209694191

Start: 662734

End: 663141

Strand: Direct

Name: rbfA

Synonym: VSAL_I0599

Alternate gene names: 209694191

Gene position: 662734-663141 (Clockwise)

Preceding gene: 209694190

Following gene: 209694192

Centisome position: 19.93

GC content: 41.67

Gene sequence:

>408_bases
ATGTCAAAAGAATTTAGCCGCGCACAACGTGTGTCGCAACAGCTACAAAAAGAATTAGCCGTAATTCTACAACGTGAAGT
TCGTGATTCACGCATCGGTATGGTGACTATTTCAGATGTTGAAGTATCTCGTGATCTTGCTTACGCAAAAGTATTCGTTA
CTTTTTTCTGTGTTGGTGAGCAAACGCCTGAAACATGTCTAGCGGCATTGAAAGAACACGAAGTACCTGTTCGAATGATG
CTTGGTAAACGTATTCGTCACCGTTTAACGCCTGAAGTACGTTTTACTTACGACAACACTTTAGTTGAAGGTATGCGCAT
GTCTAACCTAGTGTCAGATGTTGTGAATACAGATAAGCGTAAAATGGCAGAATCAGGTCGTACTGAATCTGACGAAGGGG
AAGAGTAA

Upstream 100 bases:

>100_bases
CACCTATTATTAAATAAAAATAATAGGGTAATCGGTTGTTAAATACACCATGGGGGGCTGGTAATTACCACGCCCCCCAT
CTTTCTAAGTGAGAAATGAT

Downstream 100 bases:

>100_bases
TGGCTCGTCGTCGTAAGGGTCGTCCTATAGATGGTGTTATCTTAATTGATAAACCGGCAGGAATTACGTCGAACGATACA
TTGCAAAAAGTAAAACGCAT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MSKEFSRAQRVSQQLQKELAVILQREVRDSRIGMVTISDVEVSRDLAYAKVFVTFFCVGEQTPETCLAALKEHEVPVRMM
LGKRIRHRLTPEVRFTYDNTLVEGMRMSNLVSDVVNTDKRKMAESGRTESDEGEE

Sequences:

>Translated_135_residues
MSKEFSRAQRVSQQLQKELAVILQREVRDSRIGMVTISDVEVSRDLAYAKVFVTFFCVGEQTPETCLAALKEHEVPVRMM
LGKRIRHRLTPEVRFTYDNTLVEGMRMSNLVSDVVNTDKRKMAESGRTESDEGEE
>Mature_134_residues
SKEFSRAQRVSQQLQKELAVILQREVRDSRIGMVTISDVEVSRDLAYAKVFVTFFCVGEQTPETCLAALKEHEVPVRMML
GKRIRHRLTPEVRFTYDNTLVEGMRMSNLVSDVVNTDKRKMAESGRTESDEGEE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=137, Percent_Identity=52.5547445255474, Blast_Score=134, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_ALISL (B6ENE3)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002262119.1
- ProteinModelPortal:   B6ENE3
- GeneID:   6986559
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I0599
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   PRK00521
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15499; Mature: 15368

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKEFSRAQRVSQQLQKELAVILQREVRDSRIGMVTISDVEVSRDLAYAKVFVTFFCVGE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHCCC
QTPETCLAALKEHEVPVRMMLGKRIRHRLTPEVRFTYDNTLVEGMRMSNLVSDVVNTDKR
CCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHH
KMAESGRTESDEGEE
HHHHCCCCCCCCCCC
>Mature Secondary Structure 
SKEFSRAQRVSQQLQKELAVILQREVRDSRIGMVTISDVEVSRDLAYAKVFVTFFCVGE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHCCC
QTPETCLAALKEHEVPVRMMLGKRIRHRLTPEVRFTYDNTLVEGMRMSNLVSDVVNTDKR
CCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHH
KMAESGRTESDEGEE
HHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA