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The map label for this gene is nusA [H]

Identifier: 209694189

GI number: 209694189

Start: 658434

End: 659921

Strand: Direct

Name: nusA [H]

Synonym: VSAL_I0597

Alternate gene names: 209694189

Gene position: 658434-659921 (Clockwise)

Preceding gene: 209694188

Following gene: 209694190

Centisome position: 19.8

GC content: 41.13

Gene sequence:

>1488_bases
ATGAACAAAGAAATCTTAGCTGTTGTAGAAGCAGTATCAAATGAAAAAGCTGTTCCTCGTGAACGAATTTTTGAAGCATT
AGAAATCGCATTAGCAACAGCAACAAAGAAAAAATCTGCGCTGGAAATTGAAGTACGTGTAGCGATTGATCGCAAAACAG
GTGCAGTTGAAACTTTCCGTCGTTGGGTTGCGGTTGCTCAAGTTGAGCACCCTACATTAGAAATATCTATTGAAGCGGCA
CAATTTGAAGATGAAACAATCGAAATCGGTGGTTTTATTGAAGATGATATCGAATCAGTAACGTTTGACCGTATTACGAC
ACAAACAGCGAAGCAAGTTATCGTACAAAAAGTACGTGAAGCTGAGCGTGCGATGATCGTTGAGCAGTTTATTGATAACG
AAGGTGAGTTAATCACTGGTATCGTTAAAAAAGTAAACCGCGATGCAATTATCGTTGATCTAGGTAGCAACGCTGAAGCG
GTTATTTTACGTGAAGATCAACTTCCACGTGAAAATTTCCGTCCAGGTGACCGTGTTCGTGGTCTGCTATATGCAGTTAA
ACCAGAAGCTCGCGGTTTCCAGTTATTCATGACTCGCTCAAAAGGCGTAATGTTAACTGAATTGTTCCGCGTTGAAGTGC
CTGAAATCGGTGAAGAACTGATTGAAATTAAAGCCGCTGCTCGTGATCCTGGTTCTCGTGCTAAAATCGCTGTGAAAACA
AACGATAAACGTATTGATCCTGTTGGTGCGTGTGTTGGTATGCGTGGCGCTCGTGTTCAAGCTGTATCAAATGATCTTGG
TGGCGAACGTATTGATATCGTGCTTTGGGATGATAATCCTGCACAGTTTGTTATCAACTCTATGGCTCCAGCAGAAGTGG
CTTCTATTATTGTAGATGAAGACAACAATACGATGGATATTGCTGTTGAAGCTGATAATCTAGCACAAGCAATTGGCCGT
AGTGGTCAAAATGTACGTCTAGCGTCTCAACTGACTGGTTGGGAACTTAACGTAATGACTGTTGCTGACCTTAATAAGAA
GCACCAAGAAGAAGCTCAAGGTTCTATTGATGCATTTGTTAAGCATTTAGACATTGATGCAGATTTTGCTCAACTATTAG
TTGAAGAAGGTTTCACTACGCTTGAAGAGATCGCTTACGTACCAGTAAACGAACTATTAGAAGTGGAAGCTTTAGACGAA
GAAACAGTGGATCTTCTTCGTACTCGCGCTAAAGAAGCATTAACAACTCTCGCACTAGCACAAGAAGAGTCTCTTGATGG
TATTGAACCAGCAGAAGACTTACTTGCTCTTGAAGGTCTAGAGCGTGAATTGGCATTTAAATTTGCAGCTAAAGGTGTAA
TTACACTTGAAGATCTTGCAGACCAAGGTGTTGATGAGTTGTCTGATATTGAAGACTTAACAGAAGAACGTGCTGGTGAG
TTAATCATGGCTGCACGTAATATTTGTTGGTTTAGCGACGAAGCATAA

Upstream 100 bases:

>100_bases
ATTGTTACGGTTACAGTTGATGGTAACAATGAAGAATTTGCGTTAAGCAACATTTCAAAGGCGAACTTAGTTCCTAAATT
TTAAGGCTGAAGAGGCTAAA

Downstream 100 bases:

>100_bases
TTATTTCAGCAAGGAGAAGCGGTATGACAAAGCTTACGGTAAAAGCACTTAGTGAAGACATTGGAACTCCAGTTGACCGC
TTACTTCAGCAATTTTCAGA

Product: transcription elongation factor NusA

Products: NA

Alternate protein names: L factor; N utilization substance protein A [H]

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MNKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSALEIEVRVAIDRKTGAVETFRRWVAVAQVEHPTLEISIEAA
QFEDETIEIGGFIEDDIESVTFDRITTQTAKQVIVQKVREAERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGSNAEA
VILREDQLPRENFRPGDRVRGLLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIEIKAAARDPGSRAKIAVKT
NDKRIDPVGACVGMRGARVQAVSNDLGGERIDIVLWDDNPAQFVINSMAPAEVASIIVDEDNNTMDIAVEADNLAQAIGR
SGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFVKHLDIDADFAQLLVEEGFTTLEEIAYVPVNELLEVEALDE
ETVDLLRTRAKEALTTLALAQEESLDGIEPAEDLLALEGLERELAFKFAAKGVITLEDLADQGVDELSDIEDLTEERAGE
LIMAARNICWFSDEA

Sequences:

>Translated_495_residues
MNKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSALEIEVRVAIDRKTGAVETFRRWVAVAQVEHPTLEISIEAA
QFEDETIEIGGFIEDDIESVTFDRITTQTAKQVIVQKVREAERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGSNAEA
VILREDQLPRENFRPGDRVRGLLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIEIKAAARDPGSRAKIAVKT
NDKRIDPVGACVGMRGARVQAVSNDLGGERIDIVLWDDNPAQFVINSMAPAEVASIIVDEDNNTMDIAVEADNLAQAIGR
SGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFVKHLDIDADFAQLLVEEGFTTLEEIAYVPVNELLEVEALDE
ETVDLLRTRAKEALTTLALAQEESLDGIEPAEDLLALEGLERELAFKFAAKGVITLEDLADQGVDELSDIEDLTEERAGE
LIMAARNICWFSDEA
>Mature_495_residues
MNKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSALEIEVRVAIDRKTGAVETFRRWVAVAQVEHPTLEISIEAA
QFEDETIEIGGFIEDDIESVTFDRITTQTAKQVIVQKVREAERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGSNAEA
VILREDQLPRENFRPGDRVRGLLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIEIKAAARDPGSRAKIAVKT
NDKRIDPVGACVGMRGARVQAVSNDLGGERIDIVLWDDNPAQFVINSMAPAEVASIIVDEDNNTMDIAVEADNLAQAIGR
SGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFVKHLDIDADFAQLLVEEGFTTLEEIAYVPVNELLEVEALDE
ETVDLLRTRAKEALTTLALAQEESLDGIEPAEDLLALEGLERELAFKFAAKGVITLEDLADQGVDELSDIEDLTEERAGE
LIMAARNICWFSDEA

Specific function: Participates in both the termination and antitermination of transcription. NusA binds directly to the core enzyme of the DNA-dependent RNA polymerase. NusA also interacts with lambda N protein, RNA, rho factor, and perhaps nusB. Binds RNA [H]

COG id: COG0195

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI1789560, Length=495, Percent_Identity=77.5757575757576, Blast_Score=778, Evalue=0.0,

Paralogues:

None

Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1612 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 1,800 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010995
- InterPro:   IPR004087
- InterPro:   IPR015946
- InterPro:   IPR009019
- InterPro:   IPR004088
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR013735
- InterPro:   IPR010214
- InterPro:   IPR010213 [H]

Pfam domain/function: PF08529 NusA_N; PF00575 S1 [H]

EC number: NA

Molecular weight: Translated: 54661; Mature: 54661

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: PS50084 KH_TYPE_1 ; PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSALEIEVRVAIDRKTGAVETFR
CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCHHHHHH
RWVAVAQVEHPTLEISIEAAQFEDETIEIGGFIEDDIESVTFDRITTQTAKQVIVQKVRE
HHHHHHEECCCEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGSNAEAVILREDQLPRENFRPGDRVR
HHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCHHHC
GLLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIEIKAAARDPGSRAKIAVKT
EEEEEECCCCCCEEEEEECCCCEEEEHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEEC
NDKRIDPVGACVGMRGARVQAVSNDLGGERIDIVLWDDNPAQFVINSMAPAEVASIIVDE
CCCCCCHHHHHHCCCCCEEEEHHCCCCCCEEEEEEECCCCHHEEEECCCHHHEEEEEEEC
DNNTMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFV
CCCEEEEEEEHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEECCCHHHHHHHCCCHHHHH
KHLDIDADFAQLLVEEGFTTLEEIAYVPVNELLEVEALDEETVDLLRTRAKEALTTLALA
HHCCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
QEESLDGIEPAEDLLALEGLERELAFKFAAKGVITLEDLADQGVDELSDIEDLTEERAGE
HHCCCCCCCCHHHHHHHHCHHHHHHHHHHHCCCEEHHHHHHCCHHHHHHHHHHHHHHHCC
LIMAARNICWFSDEA
EEEHHCCEEEECCCC
>Mature Secondary Structure
MNKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSALEIEVRVAIDRKTGAVETFR
CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCHHHHHH
RWVAVAQVEHPTLEISIEAAQFEDETIEIGGFIEDDIESVTFDRITTQTAKQVIVQKVRE
HHHHHHEECCCEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGSNAEAVILREDQLPRENFRPGDRVR
HHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCHHHC
GLLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIEIKAAARDPGSRAKIAVKT
EEEEEECCCCCCEEEEEECCCCEEEEHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEEC
NDKRIDPVGACVGMRGARVQAVSNDLGGERIDIVLWDDNPAQFVINSMAPAEVASIIVDE
CCCCCCHHHHHHCCCCCEEEEHHCCCCCCEEEEEEECCCCHHEEEECCCHHHEEEEEEEC
DNNTMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFV
CCCEEEEEEEHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEECCCHHHHHHHCCCHHHHH
KHLDIDADFAQLLVEEGFTTLEEIAYVPVNELLEVEALDEETVDLLRTRAKEALTTLALA
HHCCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
QEESLDGIEPAEDLLALEGLERELAFKFAAKGVITLEDLADQGVDELSDIEDLTEERAGE
HHCCCCCCCCHHHHHHHHCHHHHHHHHHHHCCCEEHHHHHHCCHHHHHHHHHHHHHHHCC
LIMAARNICWFSDEA
EEEHHCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8113180; 11677609 [H]