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The map label for this gene is yfiC [C]

Identifier: 209694152

GI number: 209694152

Start: 613065

End: 613769

Strand: Reverse

Name: yfiC [C]

Synonym: VSAL_I0559

Alternate gene names: 209694152

Gene position: 613769-613065 (Counterclockwise)

Preceding gene: 209694154

Following gene: 209694151

Centisome position: 18.46

GC content: 34.75

Gene sequence:

>705_bases
ATGAATAAAGGCTTCACTTTCAAACAGTTCCATATCAATATTGGTCTATGCGGAATGCCAGTAAGCACCGATGGCGTGCT
TCTTGGTGCTTGGGCTAATATTGAACAAAGCAAAAATATTCTAGATATTGGCTGCGGAACGGGGTTATTAAGCCTTATGA
GTGCTCAGAGAAATGAAAATAGTCATGTTGATGCGGTAGAGTTAATGCCTCTTGCTGCTGAAGTTGCTTTACAAAACTTT
GTTCAAAGCCCTTGGAAAAACCGTTTACACTTAATTCATCAAGATATTCTTCATTATCACCCCGCTCATTTATATGACGC
TATTATTTGCAATCCACCTTATTTCAATAATGGTGAGCAATCACAGAAAGGTGAACGCTCAATTGCCCGCCATACTGATA
GCCTACCTTTTGATAAATTATTAAAATGCTGTAAGGCATTAATGTCCTCTAAAGGACGTGCAAGTTTCATTCTTCCATTC
ATTGAAGGTAATCAATTCATTGAAATTGCTAAAAAACACAGTTTTCACCTTACAAAACTAACAAAAATACAAACCACAGA
AAAAAAAGATGTTTCTAGATTATTGATTGAGCTATCAATTTTTCCTTATATTTATCAAGAGACTACATTAATAATTCACA
GTAAAGATGGTTATAGTAATGACTTTATTCAGCTCACTAGACACTTTTATCTCAATATGGCTTAA

Upstream 100 bases:

>100_bases
TTCAATACTTAAGCATTTAACAATAGATCTAAAATAGAACAATAAACCACTTAACATAAGAAACACAAAATTAACAACTA
TAACTATAAATGAGCATCTA

Downstream 100 bases:

>100_bases
AAGATCGGTGATCCGTCTCTAATAAATCACTATAATGTCTGGCTAATATCATATTTATACTCTTTAGACCTGAACGGAGA
ATCTAACAGTGATCAAAACG

Product: hypothetical protein

Products: NA

Alternate protein names: tRNA m6A37 methyltransferase

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MNKGFTFKQFHINIGLCGMPVSTDGVLLGAWANIEQSKNILDIGCGTGLLSLMSAQRNENSHVDAVELMPLAAEVALQNF
VQSPWKNRLHLIHQDILHYHPAHLYDAIICNPPYFNNGEQSQKGERSIARHTDSLPFDKLLKCCKALMSSKGRASFILPF
IEGNQFIEIAKKHSFHLTKLTKIQTTEKKDVSRLLIELSIFPYIYQETTLIIHSKDGYSNDFIQLTRHFYLNMA

Sequences:

>Translated_234_residues
MNKGFTFKQFHINIGLCGMPVSTDGVLLGAWANIEQSKNILDIGCGTGLLSLMSAQRNENSHVDAVELMPLAAEVALQNF
VQSPWKNRLHLIHQDILHYHPAHLYDAIICNPPYFNNGEQSQKGERSIARHTDSLPFDKLLKCCKALMSSKGRASFILPF
IEGNQFIEIAKKHSFHLTKLTKIQTTEKKDVSRLLIELSIFPYIYQETTLIIHSKDGYSNDFIQLTRHFYLNMA
>Mature_234_residues
MNKGFTFKQFHINIGLCGMPVSTDGVLLGAWANIEQSKNILDIGCGTGLLSLMSAQRNENSHVDAVELMPLAAEVALQNF
VQSPWKNRLHLIHQDILHYHPAHLYDAIICNPPYFNNGEQSQKGERSIARHTDSLPFDKLLKCCKALMSSKGRASFILPF
IEGNQFIEIAKKHSFHLTKLTKIQTTEKKDVSRLLIELSIFPYIYQETTLIIHSKDGYSNDFIQLTRHFYLNMA

Specific function: Specifically methylates the adenine in position 37 of tRNA(Val)

COG id: COG4123

COG function: function code R; Predicted O-methyltransferase

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. tRNA (adenine-N(6)-)-methyltransferase family

Homologues:

Organism=Escherichia coli, GI87082131, Length=234, Percent_Identity=39.3162393162393, Blast_Score=155, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRMN6_ALISL (B6EMW5)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002262080.1
- ProteinModelPortal:   B6EMW5
- GeneID:   6989257
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I0559
- HOGENOM:   HBG307609
- OMA:   FKQFHIN
- ProtClustDB:   CLSK874062
- GO:   GO:0005737
- HAMAP:   MF_01872
- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR007848
- InterPro:   IPR022882
- PRINTS:   PR00507

Pfam domain/function: PF05175 MTS

EC number: =2.1.1.55

Molecular weight: Translated: 26574; Mature: 26574

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKGFTFKQFHINIGLCGMPVSTDGVLLGAWANIEQSKNILDIGCGTGLLSLMSAQRNEN
CCCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCEEEECCCHHHHHHHHHHCCCC
SHVDAVELMPLAAEVALQNFVQSPWKNRLHLIHQDILHYHPAHLYDAIICNPPYFNNGEQ
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCHHHHHHEEEECCCCCCCCCC
SQKGERSIARHTDSLPFDKLLKCCKALMSSKGRASFILPFIEGNQFIEIAKKHSFHLTKL
CHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEHHHHCCEEEEEE
TKIQTTEKKDVSRLLIELSIFPYIYQETTLIIHSKDGYSNDFIQLTRHFYLNMA
HEECCCCHHHHHHHHHHHHHHHEEECCEEEEEECCCCCCHHHHHHHHHHHEECC
>Mature Secondary Structure
MNKGFTFKQFHINIGLCGMPVSTDGVLLGAWANIEQSKNILDIGCGTGLLSLMSAQRNEN
CCCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCEEEECCCHHHHHHHHHHCCCC
SHVDAVELMPLAAEVALQNFVQSPWKNRLHLIHQDILHYHPAHLYDAIICNPPYFNNGEQ
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCHHHHHHEEEECCCCCCCCCC
SQKGERSIARHTDSLPFDKLLKCCKALMSSKGRASFILPFIEGNQFIEIAKKHSFHLTKL
CHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEHHHHCCEEEEEE
TKIQTTEKKDVSRLLIELSIFPYIYQETTLIIHSKDGYSNDFIQLTRHFYLNMA
HEECCCCHHHHHHHHHHHHHHHEEECCEEEEEECCCCCCHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA