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The map label for this gene is yggW [H]

Identifier: 209694130

GI number: 209694130

Start: 592953

End: 594113

Strand: Reverse

Name: yggW [H]

Synonym: VSAL_I0537

Alternate gene names: 209694130

Gene position: 594113-592953 (Counterclockwise)

Preceding gene: 209694131

Following gene: 209694127

Centisome position: 17.87

GC content: 41.43

Gene sequence:

>1161_bases
ATGCTAGTCCCACCACCACTCAGTTTATACATTCATATTCCTTGGTGTATTCAAAAGTGCCCATATTGTGATTTCAACTC
TCACGCGTTAAAAACAACAATTCCTGAAGCACAGTACATTTCAGCGTTAATTGACGATCTTGATACCGATCTTGCTCGTT
ATAATATGCAAAATGAACCGCGTAAACTGCATTCTATTTTTATTGGTGGTGGTACCCCGAGTTTAATTACCGCTCCAGAA
ATTAAGCGTTTACTGATCGAAGTTGAAAAACGCCTACCGTTTGCTGATGACATTGAAATCACCATGGAAGCGAACCCAGG
AACGGTAGAAGCCGGACGATTCATTGAGTACCGCGAAGCCGGCGTTAATCGTATTTCTATTGGTGTGCAAAGCTTTCAAC
AAGAGAAGTTAGAAAAACTCGGACGAATTCACGGTAAGGATGAAGCCCTTCGCGCCGCTCGTCTTGCCCATGAAGCAGGG
TTAAACAGTTTCAATCTCGACCTAATGCACGGTTTACCAAACCAAAGTATTGATGATGCTTTGTCTGATTTAAAACAGGC
CATTGAACTTAATCCGCCGCATTTATCTTGGTATCAACTCACTATCGAACCAAATACGGTGTTTTACTACAAGCCCCCTA
CTCTGCCTGATGATGATGATCTATGGGATATTTTTGAACAAGGTCATCAAATCCTTGCCGATGCAGGTTACGTTCAATAT
GAGATTTCGGGCTACAGTAAAGTCGGTTATCAATGTCGCCATAACTTAAATTATTGGCGCTTTGGCGACTATCTAGGGAT
TGGTTGTGGTGCTCATGGCAAGCTGAGTTTTGCTGATGGCCGCATTATTCGAACCACAAAGATCAAACACCCTAGAGGCT
TCTTAGACTTAATGAAACCTTACTTGATTGATGAACAAGAAGTGGCAGATCACGACAGATCTTTTGAATTCTTTATGAAC
CGTTTCCGCTTACTGGAAGCTTGTCCTAAACAAGATTTTATTGATAAAACCGGGTTAGGTTTAGAGTCGATTCAAGAAAC
AATGGATTGGGCGAAAGAGAAGAAGTATTTAGAAGAAACAGAAACGCATTGGCAGATCACAGAGCATGGAAAATTGTTCT
TGAATGATTTGTTGGAAGCGTTTGTGAGTGATGAGGAGTAA

Upstream 100 bases:

>100_bases
CTCTTCTGCAGAACTTGAACCAGCACGTAAAAAGCAACTGTCTCATCGTGGACAAGCTCTGAAAAAACTGTTCGCTGCAT
TAAAAGAAGGTCAATAATTG

Downstream 100 bases:

>100_bases
GATCAGGGTTCAGATCGCTTCGCTTAAAGGTTTCAGTAAGAGCTTAACAATCTTTTCCTGAAACCTTTAGGGAGCTTGCG
ACCGTCCTGAAACCTGCTCT

Product: coproporphyrinogen III oxidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MLVPPPLSLYIHIPWCIQKCPYCDFNSHALKTTIPEAQYISALIDDLDTDLARYNMQNEPRKLHSIFIGGGTPSLITAPE
IKRLLIEVEKRLPFADDIEITMEANPGTVEAGRFIEYREAGVNRISIGVQSFQQEKLEKLGRIHGKDEALRAARLAHEAG
LNSFNLDLMHGLPNQSIDDALSDLKQAIELNPPHLSWYQLTIEPNTVFYYKPPTLPDDDDLWDIFEQGHQILADAGYVQY
EISGYSKVGYQCRHNLNYWRFGDYLGIGCGAHGKLSFADGRIIRTTKIKHPRGFLDLMKPYLIDEQEVADHDRSFEFFMN
RFRLLEACPKQDFIDKTGLGLESIQETMDWAKEKKYLEETETHWQITEHGKLFLNDLLEAFVSDEE

Sequences:

>Translated_386_residues
MLVPPPLSLYIHIPWCIQKCPYCDFNSHALKTTIPEAQYISALIDDLDTDLARYNMQNEPRKLHSIFIGGGTPSLITAPE
IKRLLIEVEKRLPFADDIEITMEANPGTVEAGRFIEYREAGVNRISIGVQSFQQEKLEKLGRIHGKDEALRAARLAHEAG
LNSFNLDLMHGLPNQSIDDALSDLKQAIELNPPHLSWYQLTIEPNTVFYYKPPTLPDDDDLWDIFEQGHQILADAGYVQY
EISGYSKVGYQCRHNLNYWRFGDYLGIGCGAHGKLSFADGRIIRTTKIKHPRGFLDLMKPYLIDEQEVADHDRSFEFFMN
RFRLLEACPKQDFIDKTGLGLESIQETMDWAKEKKYLEETETHWQITEHGKLFLNDLLEAFVSDEE
>Mature_386_residues
MLVPPPLSLYIHIPWCIQKCPYCDFNSHALKTTIPEAQYISALIDDLDTDLARYNMQNEPRKLHSIFIGGGTPSLITAPE
IKRLLIEVEKRLPFADDIEITMEANPGTVEAGRFIEYREAGVNRISIGVQSFQQEKLEKLGRIHGKDEALRAARLAHEAG
LNSFNLDLMHGLPNQSIDDALSDLKQAIELNPPHLSWYQLTIEPNTVFYYKPPTLPDDDDLWDIFEQGHQILADAGYVQY
EISGYSKVGYQCRHNLNYWRFGDYLGIGCGAHGKLSFADGRIIRTTKIKHPRGFLDLMKPYLIDEQEVADHDRSFEFFMN
RFRLLEACPKQDFIDKTGLGLESIQETMDWAKEKKYLEETETHWQITEHGKLFLNDLLEAFVSDEE

Specific function: Unknown

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=272, Percent_Identity=35.2941176470588, Blast_Score=181, Evalue=1e-45,
Organism=Escherichia coli, GI1789325, Length=384, Percent_Identity=65.3645833333333, Blast_Score=528, Evalue=1e-151,
Organism=Escherichia coli, GI87082341, Length=238, Percent_Identity=32.3529411764706, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR004559
- InterPro:   IPR010723
- InterPro:   IPR007197 [H]

Pfam domain/function: PF06969 HemN_C; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 44337; Mature: 44337

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVPPPLSLYIHIPWCIQKCPYCDFNSHALKTTIPEAQYISALIDDLDTDLARYNMQNEP
CCCCCCCEEEEECCHHHHHCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCC
RKLHSIFIGGGTPSLITAPEIKRLLIEVEKRLPFADDIEITMEANPGTVEAGRFIEYREA
CEEEEEEECCCCCCCEECHHHHHHHHHHHHHCCCCCCCEEEEECCCCEECCCCCHHHHHC
GVNRISIGVQSFQQEKLEKLGRIHGKDEALRAARLAHEAGLNSFNLDLMHGLPNQSIDDA
CCCEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHH
LSDLKQAIELNPPHLSWYQLTIEPNTVFYYKPPTLPDDDDLWDIFEQGHQILADAGYVQY
HHHHHHHHHCCCCCCEEEEEEEECCEEEEECCCCCCCCCHHHHHHHHCHHHHHCCCEEEE
EISGYSKVGYQCRHNLNYWRFGDYLGIGCGAHGKLSFADGRIIRTTKIKHPRGFLDLMKP
EECCCHHHCHHHHCCCCEEEECCEEEECCCCCCEEEECCCEEEEEEECCCCCHHHHHHHH
YLIDEQEVADHDRSFEFFMNRFRLLEACPKQDFIDKTGLGLESIQETMDWAKEKKYLEET
HHCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHH
ETHWQITEHGKLFLNDLLEAFVSDEE
CCCEEECCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLVPPPLSLYIHIPWCIQKCPYCDFNSHALKTTIPEAQYISALIDDLDTDLARYNMQNEP
CCCCCCCEEEEECCHHHHHCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCC
RKLHSIFIGGGTPSLITAPEIKRLLIEVEKRLPFADDIEITMEANPGTVEAGRFIEYREA
CEEEEEEECCCCCCCEECHHHHHHHHHHHHHCCCCCCCEEEEECCCCEECCCCCHHHHHC
GVNRISIGVQSFQQEKLEKLGRIHGKDEALRAARLAHEAGLNSFNLDLMHGLPNQSIDDA
CCCEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHH
LSDLKQAIELNPPHLSWYQLTIEPNTVFYYKPPTLPDDDDLWDIFEQGHQILADAGYVQY
HHHHHHHHHCCCCCCEEEEEEEECCEEEEECCCCCCCCCHHHHHHHHCHHHHHCCCEEEE
EISGYSKVGYQCRHNLNYWRFGDYLGIGCGAHGKLSFADGRIIRTTKIKHPRGFLDLMKP
EECCCHHHCHHHHCCCCEEEECCEEEECCCCCCEEEECCCEEEEEEECCCCCHHHHHHHH
YLIDEQEVADHDRSFEFFMNRFRLLEACPKQDFIDKTGLGLESIQETMDWAKEKKYLEET
HHCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHH
ETHWQITEHGKLFLNDLLEAFVSDEE
CCCEEECCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]