| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is yrbB [C]
Identifier: 209694104
GI number: 209694104
Start: 566442
End: 566762
Strand: Direct
Name: yrbB [C]
Synonym: VSAL_I0509
Alternate gene names: 209694104
Gene position: 566442-566762 (Clockwise)
Preceding gene: 209694103
Following gene: 209694105
Centisome position: 17.04
GC content: 35.83
Gene sequence:
>321_bases ATGAGCGAAATGGATTTATGTGAGGCTAAATCTGATGAAATTAGCTTCAAAGGGACGCTTGATCGTGAGACTGTGCCTAA TCTTTGGAATAAATTGACAGAATGGAAACCTAAACTTGAGCAAGTAAAGGTAGACTTAACTCACGTTAATCGTATTGACT CAGCAGGTGTTGTGTTACTTTTACACCTAATAGAGCATGCAAAAAAACAAAACTGTCATATAATGCTTGCTTTCGTCCCT GATCAGCTCATTACTTTAATTCAATTAAGTAATGTGGAATCATTGTTTGCTGATCACTTAATAACGCAAAAGGTAGAGTA A
Upstream 100 bases:
>100_bases CTGAATGGAGTGCTAAGATTCGTAAAGAAGGCATTGAGTCAGTCAGTAAAGAATTAACCTCATTAGCCGCTCAACCTATT CGCTTAGAAGGAAGTAAGTA
Downstream 100 bases:
>100_bases TGGATAGCGCCGAGATTAAAGAATTATTAGACGCAGCACTTCAACTTCAAGAGATTCACGTTAAAGGTGAAGGAAGCCAT TTTGAAGTTATTGCTGTGGA
Product: conserved hypothetical protein containing
Products: NA
Alternate protein names: YrbB Protein
Number of amino acids: Translated: 106; Mature: 105
Protein sequence:
>106_residues MSEMDLCEAKSDEISFKGTLDRETVPNLWNKLTEWKPKLEQVKVDLTHVNRIDSAGVVLLLHLIEHAKKQNCHIMLAFVP DQLITLIQLSNVESLFADHLITQKVE
Sequences:
>Translated_106_residues MSEMDLCEAKSDEISFKGTLDRETVPNLWNKLTEWKPKLEQVKVDLTHVNRIDSAGVVLLLHLIEHAKKQNCHIMLAFVP DQLITLIQLSNVESLFADHLITQKVE >Mature_105_residues SEMDLCEAKSDEISFKGTLDRETVPNLWNKLTEWKPKLEQVKVDLTHVNRIDSAGVVLLLHLIEHAKKQNCHIMLAFVPD QLITLIQLSNVESLFADHLITQKVE
Specific function: Unknown
COG id: COG3113
COG function: function code R; Predicted NTP binding protein (contains STAS domain)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12147; Mature: 12016
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: PS50801 STAS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEMDLCEAKSDEISFKGTLDRETVPNLWNKLTEWKPKLEQVKVDLTHVNRIDSAGVVLL CCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHH LHLIEHAKKQNCHIMLAFVPDQLITLIQLSNVESLFADHLITQKVE HHHHHHHCCCCCEEEEEECCHHHHHHHHHCCHHHHHHHHHHHHCCC >Mature Secondary Structure SEMDLCEAKSDEISFKGTLDRETVPNLWNKLTEWKPKLEQVKVDLTHVNRIDSAGVVLL CCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHH LHLIEHAKKQNCHIMLAFVPDQLITLIQLSNVESLFADHLITQKVE HHHHHHHCCCCCEEEEEECCHHHHHHHHHCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA