Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is yrbB [C]

Identifier: 209694104

GI number: 209694104

Start: 566442

End: 566762

Strand: Direct

Name: yrbB [C]

Synonym: VSAL_I0509

Alternate gene names: 209694104

Gene position: 566442-566762 (Clockwise)

Preceding gene: 209694103

Following gene: 209694105

Centisome position: 17.04

GC content: 35.83

Gene sequence:

>321_bases
ATGAGCGAAATGGATTTATGTGAGGCTAAATCTGATGAAATTAGCTTCAAAGGGACGCTTGATCGTGAGACTGTGCCTAA
TCTTTGGAATAAATTGACAGAATGGAAACCTAAACTTGAGCAAGTAAAGGTAGACTTAACTCACGTTAATCGTATTGACT
CAGCAGGTGTTGTGTTACTTTTACACCTAATAGAGCATGCAAAAAAACAAAACTGTCATATAATGCTTGCTTTCGTCCCT
GATCAGCTCATTACTTTAATTCAATTAAGTAATGTGGAATCATTGTTTGCTGATCACTTAATAACGCAAAAGGTAGAGTA
A

Upstream 100 bases:

>100_bases
CTGAATGGAGTGCTAAGATTCGTAAAGAAGGCATTGAGTCAGTCAGTAAAGAATTAACCTCATTAGCCGCTCAACCTATT
CGCTTAGAAGGAAGTAAGTA

Downstream 100 bases:

>100_bases
TGGATAGCGCCGAGATTAAAGAATTATTAGACGCAGCACTTCAACTTCAAGAGATTCACGTTAAAGGTGAAGGAAGCCAT
TTTGAAGTTATTGCTGTGGA

Product: conserved hypothetical protein containing

Products: NA

Alternate protein names: YrbB Protein

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MSEMDLCEAKSDEISFKGTLDRETVPNLWNKLTEWKPKLEQVKVDLTHVNRIDSAGVVLLLHLIEHAKKQNCHIMLAFVP
DQLITLIQLSNVESLFADHLITQKVE

Sequences:

>Translated_106_residues
MSEMDLCEAKSDEISFKGTLDRETVPNLWNKLTEWKPKLEQVKVDLTHVNRIDSAGVVLLLHLIEHAKKQNCHIMLAFVP
DQLITLIQLSNVESLFADHLITQKVE
>Mature_105_residues
SEMDLCEAKSDEISFKGTLDRETVPNLWNKLTEWKPKLEQVKVDLTHVNRIDSAGVVLLLHLIEHAKKQNCHIMLAFVPD
QLITLIQLSNVESLFADHLITQKVE

Specific function: Unknown

COG id: COG3113

COG function: function code R; Predicted NTP binding protein (contains STAS domain)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12147; Mature: 12016

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS50801 STAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEMDLCEAKSDEISFKGTLDRETVPNLWNKLTEWKPKLEQVKVDLTHVNRIDSAGVVLL
CCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHH
LHLIEHAKKQNCHIMLAFVPDQLITLIQLSNVESLFADHLITQKVE
HHHHHHHCCCCCEEEEEECCHHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SEMDLCEAKSDEISFKGTLDRETVPNLWNKLTEWKPKLEQVKVDLTHVNRIDSAGVVLL
CCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHH
LHLIEHAKKQNCHIMLAFVPDQLITLIQLSNVESLFADHLITQKVE
HHHHHHHCCCCCEEEEEECCHHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA