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The map label for this gene is kdsD [H]

Identifier: 209694098

GI number: 209694098

Start: 561366

End: 562340

Strand: Reverse

Name: kdsD [H]

Synonym: VSAL_I0503

Alternate gene names: 209694098

Gene position: 562340-561366 (Counterclockwise)

Preceding gene: 209694099

Following gene: 209694097

Centisome position: 16.91

GC content: 41.54

Gene sequence:

>975_bases
ATGGCAACTCAGTTTGATTTCTGCAAAGCAGGAAAGAATGTTCTTCAAATTGAAATTGATGCACTTACCCAACTGAACAA
TTACATCAATGATGATTTTACTAAAGCATGTCAATTAATGCTGGAATGCAAACGTAAAGTCGTTATAATGGGAATGGGGA
AATCGGGACACATAGGCAAAAAGATAGCAGCTACATTGGCAAGTACCGGTACTCCCTCTTTCTTTGTGCATCCAGGCGAA
GCAAGTCATGGCGATTTAGGCATGATAGAAAAAGGGGATGTCATTTTGGCTATATCAAACTCAGGAGAAGCGGCCGAAAT
ATTAGCGCTTCTGCCTGTCATTAAACGCCAAGGTATTACGTTAATTACCATGACAAGCAAATCAAGCTCAAGCATGGCAA
ACGTGGCAGATGTAAATCTACTCATCACCGTTCCACAAGAAGCATGCCCGCTTGCTTTGGCTCCAACATCTAGCACAACA
GCAACGCTAGTCATGGGGGATGCATTAGCAATGGCTCTTTTAGAAGCTCGTGGATTCACCTCTGATGACTTTGCACTATC
TCACCCTGGTGGTGCTCTTGGTCGTAAGCTATTACTTCATCTTGCAGATATCATGCATACAGACGATGAATTACCAATGG
TAACGTCAGACGCATTAATTAAAACAGCCTTATTAGAAGTCTCAGAAAAAGGCCTCGGTATGACCGCTATCGTTGATGAA
GACCAAAAAGTCATTGGTATCTTTACCGATGGTGATTTACGTCGTCTTCTGGATAACCGCATTGATATTCACACACAAAC
CATTGGTGAAGTCATGGCTCATACTCCTTCAGTTGCAAGCCCTAATTTATTGGCTGTTGAAGGGCTAAACCTAATGCAAG
ATAAAAAAATTAATGGCTTATTGCTATGCGATGAAAACAATCGCTTAGTCGGCGCATTGAATATGCATGATCTTCTAAAA
GCAGGAGTAATGTAA

Upstream 100 bases:

>100_bases
TCCGCAGCCTTGAACTACCTCTGGTATATGGCATAATAATTGTATACGCTATTCATCTAAACCATACATCTGCTATAACC
AAAATAAAGGTGGTAACCCG

Downstream 100 bases:

>100_bases
TGCCAACCATGATCGAAACCCTTTATGGTGAAGTGGAAGAATCAATCCTCTCTATCGCTAAAACAATAAAACTGCTCATT
TGTGATGTTGATGGTGTCTT

Product: arabinose 5-phosphate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MATQFDFCKAGKNVLQIEIDALTQLNNYINDDFTKACQLMLECKRKVVIMGMGKSGHIGKKIAATLASTGTPSFFVHPGE
ASHGDLGMIEKGDVILAISNSGEAAEILALLPVIKRQGITLITMTSKSSSSMANVADVNLLITVPQEACPLALAPTSSTT
ATLVMGDALAMALLEARGFTSDDFALSHPGGALGRKLLLHLADIMHTDDELPMVTSDALIKTALLEVSEKGLGMTAIVDE
DQKVIGIFTDGDLRRLLDNRIDIHTQTIGEVMAHTPSVASPNLLAVEGLNLMQDKKINGLLLCDENNRLVGALNMHDLLK
AGVM

Sequences:

>Translated_324_residues
MATQFDFCKAGKNVLQIEIDALTQLNNYINDDFTKACQLMLECKRKVVIMGMGKSGHIGKKIAATLASTGTPSFFVHPGE
ASHGDLGMIEKGDVILAISNSGEAAEILALLPVIKRQGITLITMTSKSSSSMANVADVNLLITVPQEACPLALAPTSSTT
ATLVMGDALAMALLEARGFTSDDFALSHPGGALGRKLLLHLADIMHTDDELPMVTSDALIKTALLEVSEKGLGMTAIVDE
DQKVIGIFTDGDLRRLLDNRIDIHTQTIGEVMAHTPSVASPNLLAVEGLNLMQDKKINGLLLCDENNRLVGALNMHDLLK
AGVM
>Mature_323_residues
ATQFDFCKAGKNVLQIEIDALTQLNNYINDDFTKACQLMLECKRKVVIMGMGKSGHIGKKIAATLASTGTPSFFVHPGEA
SHGDLGMIEKGDVILAISNSGEAAEILALLPVIKRQGITLITMTSKSSSSMANVADVNLLITVPQEACPLALAPTSSTTA
TLVMGDALAMALLEARGFTSDDFALSHPGGALGRKLLLHLADIMHTDDELPMVTSDALIKTALLEVSEKGLGMTAIVDED
QKVIGIFTDGDLRRLLDNRIDIHTQTIGEVMAHTPSVASPNLLAVEGLNLMQDKKINGLLLCDENNRLVGALNMHDLLKA
GVM

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=320, Percent_Identity=61.5625, Blast_Score=399, Evalue=1e-112,
Organism=Escherichia coli, GI87082151, Length=315, Percent_Identity=47.6190476190476, Blast_Score=290, Evalue=7e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 34458; Mature: 34326

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATQFDFCKAGKNVLQIEIDALTQLNNYINDDFTKACQLMLECKRKVVIMGMGKSGHIGK
CCCCCCHHHCCCCEEEEEHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEECCCCCCCHH
KIAATLASTGTPSFFVHPGEASHGDLGMIEKGDVILAISNSGEAAEILALLPVIKRQGIT
HHHHHHHCCCCCEEEEECCCCCCCCCCEEECCCEEEEECCCCCHHHHHHHHHHHHHCCEE
LITMTSKSSSSMANVADVNLLITVPQEACPLALAPTSSTTATLVMGDALAMALLEARGFT
EEEEECCCCCCCCEEEEEEEEEECCCCCCCEEEECCCCCEEEEEEHHHHHHHHHHHCCCC
SDDFALSHPGGALGRKLLLHLADIMHTDDELPMVTSDALIKTALLEVSEKGLGMTAIVDE
CCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHCCCCEEEEECC
DQKVIGIFTDGDLRRLLDNRIDIHTQTIGEVMAHTPSVASPNLLAVEGLNLMQDKKINGL
CCEEEEEEECCHHHHHHHCCCEEHHHHHHHHHHCCCCCCCCCEEEEECCCHHHCCCCCEE
LLCDENNRLVGALNMHDLLKAGVM
EEECCCCCEEEECCHHHHHHHCCC
>Mature Secondary Structure 
ATQFDFCKAGKNVLQIEIDALTQLNNYINDDFTKACQLMLECKRKVVIMGMGKSGHIGK
CCCCCHHHCCCCEEEEEHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEECCCCCCCHH
KIAATLASTGTPSFFVHPGEASHGDLGMIEKGDVILAISNSGEAAEILALLPVIKRQGIT
HHHHHHHCCCCCEEEEECCCCCCCCCCEEECCCEEEEECCCCCHHHHHHHHHHHHHCCEE
LITMTSKSSSSMANVADVNLLITVPQEACPLALAPTSSTTATLVMGDALAMALLEARGFT
EEEEECCCCCCCCEEEEEEEEEECCCCCCCEEEECCCCCEEEEEEHHHHHHHHHHHCCCC
SDDFALSHPGGALGRKLLLHLADIMHTDDELPMVTSDALIKTALLEVSEKGLGMTAIVDE
CCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHCCCCEEEEECC
DQKVIGIFTDGDLRRLLDNRIDIHTQTIGEVMAHTPSVASPNLLAVEGLNLMQDKKINGL
CCEEEEEEECCHHHHHHHCCCEEHHHHHHHHHHCCCCCCCCCEEEEECCCHHHCCCCCEE
LLCDENNRLVGALNMHDLLKAGVM
EEECCCCCEEEECCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]