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The map label for this gene is lptC [H]

Identifier: 209694096

GI number: 209694096

Start: 560249

End: 560812

Strand: Reverse

Name: lptC [H]

Synonym: VSAL_I0501

Alternate gene names: 209694096

Gene position: 560812-560249 (Counterclockwise)

Preceding gene: 209694097

Following gene: 209694095

Centisome position: 16.87

GC content: 36.7

Gene sequence:

>564_bases
ATGACCCTAAAACACCTTTTTATGACCTTATTGTTATTGATCGCAAGTTGGTCAGGCTATTACTTGTATTATGAATACGC
AAAAAGCGAACAACAAGTAATCCCTGATCTACAAACACCTGTTTTTACAGGTAAAAACGTCAGTAATAATAACTATGATG
AAAATGGCGTTCGCAACTACCAAATAAACGCAAAAGCACTTGCTCGCTTTGCTCAAACAGGTAACACCAATTTTACCATT
CCTCATTTATTTGTATTTAAAGAGGGCAAAGTAAAAGAGTGGGAAATAATTTCGGATGTTGGTGTCCTAAATAAAGATCA
TACCCTCTATTTAACAGGAAACGTTATTATCAAAAATCTGTTACCTGAAGCTGCCTTTGACACCATGACAACTGACAGCA
TGACGATCGAACTTACAACAAAAGATTTTATGACAGATGATGTCGTCAATCTGGTTGGCCCAACTTTCGAAACTACTGGT
GTAGGAATGAAAGGTAATTTCACTAGCCAACAAACGACCCTATTAGAGAATGTACAAGGTATCTATGAAGCTTTCACACG
TTAG

Upstream 100 bases:

>100_bases
ATGTGACCACCATTAAAGGCGGTCACGGTGCGGTTCGTGAAGTAAGCGACCTTATCTTGGAAGCAAAAGGGGAATTAGAG
CAACATAAAGGCTTAAGTAT

Downstream 100 bases:

>100_bases
TCTACTTGCCGGTTTATTATTCAGTTCTTCAAGTTGGGCATTAAGCACCGATACAGAACAACCGATTCATATTAATTCAG
ACACTCAAAACTTTGATATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MTLKHLFMTLLLLIASWSGYYLYYEYAKSEQQVIPDLQTPVFTGKNVSNNNYDENGVRNYQINAKALARFAQTGNTNFTI
PHLFVFKEGKVKEWEIISDVGVLNKDHTLYLTGNVIIKNLLPEAAFDTMTTDSMTIELTTKDFMTDDVVNLVGPTFETTG
VGMKGNFTSQQTTLLENVQGIYEAFTR

Sequences:

>Translated_187_residues
MTLKHLFMTLLLLIASWSGYYLYYEYAKSEQQVIPDLQTPVFTGKNVSNNNYDENGVRNYQINAKALARFAQTGNTNFTI
PHLFVFKEGKVKEWEIISDVGVLNKDHTLYLTGNVIIKNLLPEAAFDTMTTDSMTIELTTKDFMTDDVVNLVGPTFETTG
VGMKGNFTSQQTTLLENVQGIYEAFTR
>Mature_186_residues
TLKHLFMTLLLLIASWSGYYLYYEYAKSEQQVIPDLQTPVFTGKNVSNNNYDENGVRNYQINAKALARFAQTGNTNFTIP
HLFVFKEGKVKEWEIISDVGVLNKDHTLYLTGNVIIKNLLPEAAFDTMTTDSMTIELTTKDFMTDDVVNLVGPTFETTGV
GMKGNFTSQQTTLLENVQGIYEAFTR

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG3117

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptC family [H]

Homologues:

Organism=Escherichia coli, GI1789591, Length=152, Percent_Identity=30.9210526315789, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010664 [H]

Pfam domain/function: PF06835 DUF1239 [H]

EC number: NA

Molecular weight: Translated: 21162; Mature: 21031

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLKHLFMTLLLLIASWSGYYLYYEYAKSEQQVIPDLQTPVFTGKNVSNNNYDENGVRNY
CCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCCCCCEECCCCCCCCCCCCCCCEEE
QINAKALARFAQTGNTNFTIPHLFVFKEGKVKEWEIISDVGVLNKDHTLYLTGNVIIKNL
EECHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEHHCCCCCCCCEEEEECHHHHHHH
LPEAAFDTMTTDSMTIELTTKDFMTDDVVNLVGPTFETTGVGMKGNFTSQQTTLLENVQG
CCHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
IYEAFTR
HHHHHCC
>Mature Secondary Structure 
TLKHLFMTLLLLIASWSGYYLYYEYAKSEQQVIPDLQTPVFTGKNVSNNNYDENGVRNY
CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCCCCCEECCCCCCCCCCCCCCCEEE
QINAKALARFAQTGNTNFTIPHLFVFKEGKVKEWEIISDVGVLNKDHTLYLTGNVIIKNL
EECHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEHHCCCCCCCCEEEEECHHHHHHH
LPEAAFDTMTTDSMTIELTTKDFMTDDVVNLVGPTFETTGVGMKGNFTSQQTTLLENVQG
CCHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
IYEAFTR
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]