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The map label for this gene is mshD

Identifier: 209694075

GI number: 209694075

Start: 534825

End: 535418

Strand: Direct

Name: mshD

Synonym: VSAL_I0479

Alternate gene names: NA

Gene position: 534825-535418 (Clockwise)

Preceding gene: 209694074

Following gene: 209694076

Centisome position: 16.08

GC content: 38.05

Gene sequence:

>594_bases
ATGAAAGGCTATAAATACAATCAACAAGGGTTAACGTTGATTGAATCTGTCGTTGGCATTGTGATTCTTGGTTTTGCTCT
TTCTATCTTAGTGTCAGGCGTATTTTCTTCATCAGAGAAATCACATAAGGCCACATATGAAGCTCAAGCGGCGGCATTAG
GCCATTCAATTATGACGGATATATTAAGTCGTCAGTTTGATCAACATAGTGATCCTAATGGTGGGCTATATCGTTGTGGT
GAAAAAAATGAAAGCAATACTCTTATTCCATGCTCAGTGACGTTAGGTCGTGATGGCGATGAGCAGAATGTCTCTGTAAA
TGCCAGTGTCTTTAATGATGTCGATGATTTTATTGGTTGCTGGGGAAAGGCTGAGTTATGCAGCTCAAATGGGTTAATTA
ACTATGATTTTGATAAGCTTATAGCGTCGGATAGTGCTAACGAATATAAAAATTTCACTGTTGAAATACAGGTTAATTAT
GCAAATGTAGATGGTGGCTCTTCTGTCTCGCCACCATATAAAAAAATAGATATCACCCTTTATGCGAGTCAGCATGCCAG
ATATACCTTTAGTGCCTATAGAGGTAATTATTGA

Upstream 100 bases:

>100_bases
GAATAACGATAACAACCTCTTCGTCTAATGAAAGTCGCTCTGTATGTATTAATGGTGAAGGCTTTATTTATCGCTCAATT
CTGGATGAAGGCTGCGGATT

Downstream 100 bases:

>100_bases
TGAACCGGCAACGTGGTTTTACTTTAATTGAACTGATACTAACCGTCGTGGTAGTGGCTATTGTCGCTATGGCGGCAAGC
AATACCTTATTACTTGGATT

Product: type IV pilus, prepilin-like protein (MSHD)

Products: NA

Alternate protein names: Methylation Site Containing Protein; MshD Protein; Msha Pilin Protein Mshd; Mannose-Sensitive Agglutinin; Fused MSHA Biogenesis Proteins MshN And MshD; Prepilin-Type Cleavage/Methylation-Like; Pilin Protein; Type IV Pilus Prepilin-Like Protein

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MKGYKYNQQGLTLIESVVGIVILGFALSILVSGVFSSSEKSHKATYEAQAAALGHSIMTDILSRQFDQHSDPNGGLYRCG
EKNESNTLIPCSVTLGRDGDEQNVSVNASVFNDVDDFIGCWGKAELCSSNGLINYDFDKLIASDSANEYKNFTVEIQVNY
ANVDGGSSVSPPYKKIDITLYASQHARYTFSAYRGNY

Sequences:

>Translated_197_residues
MKGYKYNQQGLTLIESVVGIVILGFALSILVSGVFSSSEKSHKATYEAQAAALGHSIMTDILSRQFDQHSDPNGGLYRCG
EKNESNTLIPCSVTLGRDGDEQNVSVNASVFNDVDDFIGCWGKAELCSSNGLINYDFDKLIASDSANEYKNFTVEIQVNY
ANVDGGSSVSPPYKKIDITLYASQHARYTFSAYRGNY
>Mature_197_residues
MKGYKYNQQGLTLIESVVGIVILGFALSILVSGVFSSSEKSHKATYEAQAAALGHSIMTDILSRQFDQHSDPNGGLYRCG
EKNESNTLIPCSVTLGRDGDEQNVSVNASVFNDVDDFIGCWGKAELCSSNGLINYDFDKLIASDSANEYKNFTVEIQVNY
ANVDGGSSVSPPYKKIDITLYASQHARYTFSAYRGNY

Specific function: Unknown

COG id: COG2165

COG function: function code NU; Type II secretory pathway, pseudopilin PulG

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21515; Mature: 21515

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGYKYNQQGLTLIESVVGIVILGFALSILVSGVFSSSEKSHKATYEAQAAALGHSIMTD
CCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
ILSRQFDQHSDPNGGLYRCGEKNESNTLIPCSVTLGRDGDEQNVSVNASVFNDVDDFIGC
HHHHHHHCCCCCCCCEEECCCCCCCCEEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHC
WGKAELCSSNGLINYDFDKLIASDSANEYKNFTVEIQVNYANVDGGSSVSPPYKKIDITL
CCCCHHHCCCCEEEECHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEEE
YASQHARYTFSAYRGNY
EECCCCEEEEEECCCCC
>Mature Secondary Structure
MKGYKYNQQGLTLIESVVGIVILGFALSILVSGVFSSSEKSHKATYEAQAAALGHSIMTD
CCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
ILSRQFDQHSDPNGGLYRCGEKNESNTLIPCSVTLGRDGDEQNVSVNASVFNDVDDFIGC
HHHHHHHCCCCCCCCEEECCCCCCCCEEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHC
WGKAELCSSNGLINYDFDKLIASDSANEYKNFTVEIQVNYANVDGGSSVSPPYKKIDITL
CCCCHHHCCCCEEEECHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEEE
YASQHARYTFSAYRGNY
EECCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA