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The map label for this gene is mshC

Identifier: 209694074

GI number: 209694074

Start: 534214

End: 534828

Strand: Direct

Name: mshC

Synonym: VSAL_I0478

Alternate gene names: NA

Gene position: 534214-534828 (Clockwise)

Preceding gene: 209694073

Following gene: 209694075

Centisome position: 16.07

GC content: 37.07

Gene sequence:

>615_bases
ATGAAAGTTCCACGTATTAAATTACAGCAAATAAAACGAATAAAAATCAATGGATTTACATTAATTGAATTAATAGTCGT
GATCGTACTATTAGCGATTATTGCTGCTTATGCATCGAGTAAATACATGGGAGTGAGCCGTTTTTCGTCGGCCGCCGCAC
AAGAACAAGTCATGTCTATTTTACGTCAGATCCAAGTCGCTTCAATGCAAACCAATATCCCGATAAATGAGACCAGTAAA
GATGGGGTAGATGAGTGTCGAATTCTACATCTCGCTTCAGATAAATTTGGCGTATCGCAAGCATGCCAAAATCAAAATAT
GAACAGTGCGGTGTTGTCTGATTATTCAAAAGAGACAAATCAACAACAACTCGAATTAATGAAATTAAGTTATGAGTTTA
CTAATAGTGATGGTGCTATTTCGATATCTCAATTGTCATTTGATTTATTAGGACGACCTATTATTCCACTTTCTTCTGCT
ACCTCTTCTTTATGCTCAGGGGAGGATTGCCGAATAACGATAACAACCTCTTCGTCTAATGAAAGTCGCTCTGTATGTAT
TAATGGTGAAGGCTTTATTTATCGCTCAATTCTGGATGAAGGCTGCGGATTATGA

Upstream 100 bases:

>100_bases
AGCGATCTCCGCTGGTTTTTTTGTATCTAAAACTAACATTTACTCGCTATCTTTCTTAATTCAATTATCCTAGTAACAGG
CGGCAATAAGGTAACGGGTA

Downstream 100 bases:

>100_bases
AAGGCTATAAATACAATCAACAAGGGTTAACGTTGATTGAATCTGTCGTTGGCATTGTGATTCTTGGTTTTGCTCTTTCT
ATCTTAGTGTCAGGCGTATT

Product: type IV pilus, prepilin-like protein (MSHC)

Products: NA

Alternate protein names: Type IV Pilus Prepilin-Like Protein

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MKVPRIKLQQIKRIKINGFTLIELIVVIVLLAIIAAYASSKYMGVSRFSSAAAQEQVMSILRQIQVASMQTNIPINETSK
DGVDECRILHLASDKFGVSQACQNQNMNSAVLSDYSKETNQQQLELMKLSYEFTNSDGAISISQLSFDLLGRPIIPLSSA
TSSLCSGEDCRITITTSSSNESRSVCINGEGFIYRSILDEGCGL

Sequences:

>Translated_204_residues
MKVPRIKLQQIKRIKINGFTLIELIVVIVLLAIIAAYASSKYMGVSRFSSAAAQEQVMSILRQIQVASMQTNIPINETSK
DGVDECRILHLASDKFGVSQACQNQNMNSAVLSDYSKETNQQQLELMKLSYEFTNSDGAISISQLSFDLLGRPIIPLSSA
TSSLCSGEDCRITITTSSSNESRSVCINGEGFIYRSILDEGCGL
>Mature_204_residues
MKVPRIKLQQIKRIKINGFTLIELIVVIVLLAIIAAYASSKYMGVSRFSSAAAQEQVMSILRQIQVASMQTNIPINETSK
DGVDECRILHLASDKFGVSQACQNQNMNSAVLSDYSKETNQQQLELMKLSYEFTNSDGAISISQLSFDLLGRPIIPLSSA
TSSLCSGEDCRITITTSSSNESRSVCINGEGFIYRSILDEGCGL

Specific function: Unknown

COG id: COG2165

COG function: function code NU; Type II secretory pathway, pseudopilin PulG

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22314; Mature: 22314

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVPRIKLQQIKRIKINGFTLIELIVVIVLLAIIAAYASSKYMGVSRFSSAAAQEQVMSI
CCCCCHHHHHHHEHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LRQIQVASMQTNIPINETSKDGVDECRILHLASDKFGVSQACQNQNMNSAVLSDYSKETN
HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCHHHHHHHHHHCC
QQQLELMKLSYEFTNSDGAISISQLSFDLLGRPIIPLSSATSSLCSGEDCRITITTSSSN
HHHHHHHHHHHEEECCCCCEEHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEEECCCC
ESRSVCINGEGFIYRSILDEGCGL
CCCEEEECCCCEEHHHHHHHCCCC
>Mature Secondary Structure
MKVPRIKLQQIKRIKINGFTLIELIVVIVLLAIIAAYASSKYMGVSRFSSAAAQEQVMSI
CCCCCHHHHHHHEHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LRQIQVASMQTNIPINETSKDGVDECRILHLASDKFGVSQACQNQNMNSAVLSDYSKETN
HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCHHHHHHHHHHCC
QQQLELMKLSYEFTNSDGAISISQLSFDLLGRPIIPLSSATSSLCSGEDCRITITTSSSN
HHHHHHHHHHHEEECCCCCEEHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEEECCCC
ESRSVCINGEGFIYRSILDEGCGL
CCCEEEECCCCEEHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA