| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is mshG [H]
Identifier: 209694069
GI number: 209694069
Start: 530410
End: 531636
Strand: Direct
Name: mshG [H]
Synonym: VSAL_I0473
Alternate gene names: 209694069
Gene position: 530410-531636 (Clockwise)
Preceding gene: 209694068
Following gene: 209694070
Centisome position: 15.95
GC content: 41.16
Gene sequence:
>1227_bases ATGGCGATGTTTAAATACAGTGGTCGAAATGCACGTGGCATACAAGTGTCTGGTCGTGTTGAATCGGTTTCTCAAGAAGG GGCTGCTGAGCAATTGATGAATGAAGGGATTATCCCAACCTCCATTGTTGCGAGTAAGTTTGGCTCTTCATCAAGTACGT TAGATTGGAAGAAATGGTTTCAACCTAATATTCCTTTAGATGTATTAGTGATTTTTTGTCGTCAAATGTACAGCTTAACT AAAGCGGGTGTGCCGCTATTACGTGCAATGAATGGGTTATCACAAAACAGCAGCAATAAGATATTAAAAAAAGCATTGGA CGAAGTAACCAGTGACTTAACCAATGGCCGCAGTTTGTCTGTGTCTATGCAGCAGCATCCTCATGTGTTTAGTTCACTTT TTGTCTCTATGATTCATGTGGGAGAGAATACGGGTCGTTTAGATCAGGCTCTGATGCAGTTAGCGAGCTACTACGAACAA GAAATGGAAACACGTAAGCGAATCAAATCTGCCATGCGTTATCCTATTTTTGTTCTGAGTTTTATCTTACTGGCGATGTT TGTATTGAACGTTAAAGTGATTCCACAGTTTACGAGTATGTTTGCTCGCTTTGGGGTTGAACTGCCTTTACCTACTCGAA TATTAATGGCGACATCCAGTTTCTTTGTTAATTATTGGCATGTGCTAATCGCCGCAATGGCGGGGGCATTTTGTGCTTTT CAAGCTTGGATTAGTCGAGATGACGGAAGAGAAAAGTGGGATAAGTTTCGTTTAAAGGTGCCAATTGTGGGAGATATTGT CACTCGGGCACAAATGTCGCGTTTTTCTCGTACCTTTGCATTGATGCTTAAATCGGGTGTTCCATTGAATCAATCGTTAG CGCTTTCTGCCGAAGCACTAGGAAATAAGTATTTAGAAAATCGTTTATTAGAAATGAAAAACGGCATTGAATCGGGCACC AGTATGTCGGCAACTGCGGCGCAAAGCGGTATTTTCACTCCGCTTGTTCAACAGATGATTGCGGTTGGTGAAGAAACTGG ACAAATAGATGATCTCTTACTGGAAGTCTCCGATTTCTATGACAGAGAAGTCGATTATGATTTAAGAACATTAACCGCCA GAATTGAGCCTTTACTTTTGGTTGTTGTGGCCGGAATGGTCTTAATTTTAGCGTTGGGTATTTTCTTACCAATGTGGAAT ATGTTGGATGTAGTGAAGGGTTCATAA
Upstream 100 bases:
>100_bases TTAGCAATGAATGGCATCATCAGTCTTGATGAAGTTATGATCCTTGGTGAAGGGGACAATGCCGCCTCTCATCAGCCAAT ATTGATGTAAGGCGTTAATA
Downstream 100 bases:
>100_bases TGGTGTCATCGTCCCGAATTATGTGGGGGACAATATTCGTTATTCTGTTAGCTACGATTATGTGGCAATGGAATAAAATG GAACCCGAAGTTGAAAATGC
Product: type IV pilus, mannose-sensitive hemagglutinin protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 408; Mature: 407
Protein sequence:
>408_residues MAMFKYSGRNARGIQVSGRVESVSQEGAAEQLMNEGIIPTSIVASKFGSSSSTLDWKKWFQPNIPLDVLVIFCRQMYSLT KAGVPLLRAMNGLSQNSSNKILKKALDEVTSDLTNGRSLSVSMQQHPHVFSSLFVSMIHVGENTGRLDQALMQLASYYEQ EMETRKRIKSAMRYPIFVLSFILLAMFVLNVKVIPQFTSMFARFGVELPLPTRILMATSSFFVNYWHVLIAAMAGAFCAF QAWISRDDGREKWDKFRLKVPIVGDIVTRAQMSRFSRTFALMLKSGVPLNQSLALSAEALGNKYLENRLLEMKNGIESGT SMSATAAQSGIFTPLVQQMIAVGEETGQIDDLLLEVSDFYDREVDYDLRTLTARIEPLLLVVVAGMVLILALGIFLPMWN MLDVVKGS
Sequences:
>Translated_408_residues MAMFKYSGRNARGIQVSGRVESVSQEGAAEQLMNEGIIPTSIVASKFGSSSSTLDWKKWFQPNIPLDVLVIFCRQMYSLT KAGVPLLRAMNGLSQNSSNKILKKALDEVTSDLTNGRSLSVSMQQHPHVFSSLFVSMIHVGENTGRLDQALMQLASYYEQ EMETRKRIKSAMRYPIFVLSFILLAMFVLNVKVIPQFTSMFARFGVELPLPTRILMATSSFFVNYWHVLIAAMAGAFCAF QAWISRDDGREKWDKFRLKVPIVGDIVTRAQMSRFSRTFALMLKSGVPLNQSLALSAEALGNKYLENRLLEMKNGIESGT SMSATAAQSGIFTPLVQQMIAVGEETGQIDDLLLEVSDFYDREVDYDLRTLTARIEPLLLVVVAGMVLILALGIFLPMWN MLDVVKGS >Mature_407_residues AMFKYSGRNARGIQVSGRVESVSQEGAAEQLMNEGIIPTSIVASKFGSSSSTLDWKKWFQPNIPLDVLVIFCRQMYSLTK AGVPLLRAMNGLSQNSSNKILKKALDEVTSDLTNGRSLSVSMQQHPHVFSSLFVSMIHVGENTGRLDQALMQLASYYEQE METRKRIKSAMRYPIFVLSFILLAMFVLNVKVIPQFTSMFARFGVELPLPTRILMATSSFFVNYWHVLIAAMAGAFCAFQ AWISRDDGREKWDKFRLKVPIVGDIVTRAQMSRFSRTFALMLKSGVPLNQSLALSAEALGNKYLENRLLEMKNGIESGTS MSATAAQSGIFTPLVQQMIAVGEETGQIDDLLLEVSDFYDREVDYDLRTLTARIEPLLLVVVAGMVLILALGIFLPMWNM LDVVKGS
Specific function: Involved in the translocation of the type IV pilin [H]
COG id: COG1459
COG function: function code NU; Type II secretory pathway, component PulF
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP F family [H]
Homologues:
Organism=Escherichia coli, GI1789724, Length=398, Percent_Identity=27.1356783919598, Blast_Score=182, Evalue=5e-47, Organism=Escherichia coli, GI1786295, Length=338, Percent_Identity=25.1479289940828, Blast_Score=120, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003004 - InterPro: IPR018076 - InterPro: IPR001992 [H]
Pfam domain/function: PF00482 GSPII_F [H]
EC number: NA
Molecular weight: Translated: 45492; Mature: 45361
Theoretical pI: Translated: 9.22; Mature: 9.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMFKYSGRNARGIQVSGRVESVSQEGAAEQLMNEGIIPTSIVASKFGSSSSTLDWKKWF CCEEEECCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHC QPNIPLDVLVIFCRQMYSLTKAGVPLLRAMNGLSQNSSNKILKKALDEVTSDLTNGRSLS CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEE VSMQQHPHVFSSLFVSMIHVGENTGRLDQALMQLASYYEQEMETRKRIKSAMRYPIFVLS EEHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FILLAMFVLNVKVIPQFTSMFARFGVELPLPTRILMATSSFFVNYWHVLIAAMAGAFCAF HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QAWISRDDGREKWDKFRLKVPIVGDIVTRAQMSRFSRTFALMLKSGVPLNQSLALSAEAL HHHHCCCCCHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH GNKYLENRLLEMKNGIESGTSMSATAAQSGIFTPLVQQMIAVGEETGQIDDLLLEVSDFY HHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH DREVDYDLRTLTARIEPLLLVVVAGMVLILALGIFLPMWNMLDVVKGS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AMFKYSGRNARGIQVSGRVESVSQEGAAEQLMNEGIIPTSIVASKFGSSSSTLDWKKWF CEEEECCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHC QPNIPLDVLVIFCRQMYSLTKAGVPLLRAMNGLSQNSSNKILKKALDEVTSDLTNGRSLS CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEE VSMQQHPHVFSSLFVSMIHVGENTGRLDQALMQLASYYEQEMETRKRIKSAMRYPIFVLS EEHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FILLAMFVLNVKVIPQFTSMFARFGVELPLPTRILMATSSFFVNYWHVLIAAMAGAFCAF HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QAWISRDDGREKWDKFRLKVPIVGDIVTRAQMSRFSRTFALMLKSGVPLNQSLALSAEAL HHHHCCCCCHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH GNKYLENRLLEMKNGIESGTSMSATAAQSGIFTPLVQQMIAVGEETGQIDDLLLEVSDFY HHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH DREVDYDLRTLTARIEPLLLVVVAGMVLILALGIFLPMWNMLDVVKGS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8820654 [H]