Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694009

Identifier: 209694009

GI number: 209694009

Start: 445766

End: 446635

Strand: Reverse

Name: 209694009

Synonym: VSAL_I0408

Alternate gene names: NA

Gene position: 446635-445766 (Counterclockwise)

Preceding gene: 209694010

Following gene: 209694007

Centisome position: 13.43

GC content: 40.11

Gene sequence:

>870_bases
ATGACCCAATTGAAACCACAGATATCACCCACTAATATGGCCATATTATTACTTGTTTTAGGTAATTTGATGGCATCACT
GTCAGATGTCGCCGTAAAGGTGTTGGAAGGGGGCGTATCCCCTTTTCAGTATATTTTTATACGCCAGCTTGTTTCCTTAG
CGCTTATTTTTCCTTTTTGGATTAAACAACCATCAGCAGAGCGACAAATAAGCAATATAAAAATGACGGCGATTCGTGCC
CATGTCGTATTAATCGGCAGTGGTTGCATGGTGGTATCCATTACCTATCTTTCTTTAGCCACCGCAAACGCCATTTTTTA
TACCGCACCATTAATCATGATCCCTTTGTCGATGCTATTACTAAAAGAAAAACCATCCACAAAAAAAATCATTCAAACCT
TAATTGGATTTCTTGGTGTACTCATTATTCTCCGACCTTCTCAATTCCATTGGGCGGCTATTTTTGCCCTCGGTACCGCG
ATAACCTTAGCGCTGTTTAATATTTTAATCCGACGGATACCCAGCGAACAATCGGTTATTACAACGTTACTGTGGACAAC
CTTATTGTCTTTACCTGTATCAGGTACTTTGGCGTTTTTATATTGGCAACCATTAACACTCCACGCTTTTTTCTGGGTAG
CGTTAAGTGCCAGTTGTATAATTACGTACAATGGATTGGCAACGATGGCCTATAAGAAAGCCCCTGCGACACAAATTTCT
TTGGCTGAGTATTCAGGGTTAATTTTTGTCGTTTTATTTGGGGTATGGTGGTTTGATGAAGTGCCAGACAGCTTAACATT
GGTAGGGATTGGATTAATTATTTTCCCTCTAATGCCCAAAGCATGGCTCAAAAACCTAAGAGGGAAATAA

Upstream 100 bases:

>100_bases
AGCACTTAACTCATTTCTATCAAAAACACGGTTTTACCGTTATCTCTGATATGTACTTAGAAGATGATATTCCTCACGTC
GACATGCGTTTAGAAAAATA

Downstream 100 bases:

>100_bases
ATCAGCCGGAATTATTTACTGCGGCCGAAATTGCCATCAGACATTCTAAAATACATCACCGCTTGGCCTTCTCGCTCGAT
TTGAATGATATCCAAATCCC

Product: integral membrane protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MTQLKPQISPTNMAILLLVLGNLMASLSDVAVKVLEGGVSPFQYIFIRQLVSLALIFPFWIKQPSAERQISNIKMTAIRA
HVVLIGSGCMVVSITYLSLATANAIFYTAPLIMIPLSMLLLKEKPSTKKIIQTLIGFLGVLIILRPSQFHWAAIFALGTA
ITLALFNILIRRIPSEQSVITTLLWTTLLSLPVSGTLAFLYWQPLTLHAFFWVALSASCIITYNGLATMAYKKAPATQIS
LAEYSGLIFVVLFGVWWFDEVPDSLTLVGIGLIIFPLMPKAWLKNLRGK

Sequences:

>Translated_289_residues
MTQLKPQISPTNMAILLLVLGNLMASLSDVAVKVLEGGVSPFQYIFIRQLVSLALIFPFWIKQPSAERQISNIKMTAIRA
HVVLIGSGCMVVSITYLSLATANAIFYTAPLIMIPLSMLLLKEKPSTKKIIQTLIGFLGVLIILRPSQFHWAAIFALGTA
ITLALFNILIRRIPSEQSVITTLLWTTLLSLPVSGTLAFLYWQPLTLHAFFWVALSASCIITYNGLATMAYKKAPATQIS
LAEYSGLIFVVLFGVWWFDEVPDSLTLVGIGLIIFPLMPKAWLKNLRGK
>Mature_288_residues
TQLKPQISPTNMAILLLVLGNLMASLSDVAVKVLEGGVSPFQYIFIRQLVSLALIFPFWIKQPSAERQISNIKMTAIRAH
VVLIGSGCMVVSITYLSLATANAIFYTAPLIMIPLSMLLLKEKPSTKKIIQTLIGFLGVLIILRPSQFHWAAIFALGTAI
TLALFNILIRRIPSEQSVITTLLWTTLLSLPVSGTLAFLYWQPLTLHAFFWVALSASCIITYNGLATMAYKKAPATQISL
AEYSGLIFVVLFGVWWFDEVPDSLTLVGIGLIIFPLMPKAWLKNLRGK

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31910; Mature: 31779

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLKPQISPTNMAILLLVLGNLMASLSDVAVKVLEGGVSPFQYIFIRQLVSLALIFPFW
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
IKQPSAERQISNIKMTAIRAHVVLIGSGCMVVSITYLSLATANAIFYTAPLIMIPLSMLL
HCCCCHHHHHHHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKEKPSTKKIIQTLIGFLGVLIILRPSQFHWAAIFALGTAITLALFNILIRRIPSEQSVI
HCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
TTLLWTTLLSLPVSGTLAFLYWQPLTLHAFFWVALSASCIITYNGLATMAYKKAPATQIS
HHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCEEE
LAEYSGLIFVVLFGVWWFDEVPDSLTLVGIGLIIFPLMPKAWLKNLRGK
HHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCC
>Mature Secondary Structure 
TQLKPQISPTNMAILLLVLGNLMASLSDVAVKVLEGGVSPFQYIFIRQLVSLALIFPFW
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
IKQPSAERQISNIKMTAIRAHVVLIGSGCMVVSITYLSLATANAIFYTAPLIMIPLSMLL
HCCCCHHHHHHHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKEKPSTKKIIQTLIGFLGVLIILRPSQFHWAAIFALGTAITLALFNILIRRIPSEQSVI
HCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
TTLLWTTLLSLPVSGTLAFLYWQPLTLHAFFWVALSASCIITYNGLATMAYKKAPATQIS
HHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCEEE
LAEYSGLIFVVLFGVWWFDEVPDSLTLVGIGLIIFPLMPKAWLKNLRGK
HHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA