Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694009
Identifier: 209694009
GI number: 209694009
Start: 445766
End: 446635
Strand: Reverse
Name: 209694009
Synonym: VSAL_I0408
Alternate gene names: NA
Gene position: 446635-445766 (Counterclockwise)
Preceding gene: 209694010
Following gene: 209694007
Centisome position: 13.43
GC content: 40.11
Gene sequence:
>870_bases ATGACCCAATTGAAACCACAGATATCACCCACTAATATGGCCATATTATTACTTGTTTTAGGTAATTTGATGGCATCACT GTCAGATGTCGCCGTAAAGGTGTTGGAAGGGGGCGTATCCCCTTTTCAGTATATTTTTATACGCCAGCTTGTTTCCTTAG CGCTTATTTTTCCTTTTTGGATTAAACAACCATCAGCAGAGCGACAAATAAGCAATATAAAAATGACGGCGATTCGTGCC CATGTCGTATTAATCGGCAGTGGTTGCATGGTGGTATCCATTACCTATCTTTCTTTAGCCACCGCAAACGCCATTTTTTA TACCGCACCATTAATCATGATCCCTTTGTCGATGCTATTACTAAAAGAAAAACCATCCACAAAAAAAATCATTCAAACCT TAATTGGATTTCTTGGTGTACTCATTATTCTCCGACCTTCTCAATTCCATTGGGCGGCTATTTTTGCCCTCGGTACCGCG ATAACCTTAGCGCTGTTTAATATTTTAATCCGACGGATACCCAGCGAACAATCGGTTATTACAACGTTACTGTGGACAAC CTTATTGTCTTTACCTGTATCAGGTACTTTGGCGTTTTTATATTGGCAACCATTAACACTCCACGCTTTTTTCTGGGTAG CGTTAAGTGCCAGTTGTATAATTACGTACAATGGATTGGCAACGATGGCCTATAAGAAAGCCCCTGCGACACAAATTTCT TTGGCTGAGTATTCAGGGTTAATTTTTGTCGTTTTATTTGGGGTATGGTGGTTTGATGAAGTGCCAGACAGCTTAACATT GGTAGGGATTGGATTAATTATTTTCCCTCTAATGCCCAAAGCATGGCTCAAAAACCTAAGAGGGAAATAA
Upstream 100 bases:
>100_bases AGCACTTAACTCATTTCTATCAAAAACACGGTTTTACCGTTATCTCTGATATGTACTTAGAAGATGATATTCCTCACGTC GACATGCGTTTAGAAAAATA
Downstream 100 bases:
>100_bases ATCAGCCGGAATTATTTACTGCGGCCGAAATTGCCATCAGACATTCTAAAATACATCACCGCTTGGCCTTCTCGCTCGAT TTGAATGATATCCAAATCCC
Product: integral membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MTQLKPQISPTNMAILLLVLGNLMASLSDVAVKVLEGGVSPFQYIFIRQLVSLALIFPFWIKQPSAERQISNIKMTAIRA HVVLIGSGCMVVSITYLSLATANAIFYTAPLIMIPLSMLLLKEKPSTKKIIQTLIGFLGVLIILRPSQFHWAAIFALGTA ITLALFNILIRRIPSEQSVITTLLWTTLLSLPVSGTLAFLYWQPLTLHAFFWVALSASCIITYNGLATMAYKKAPATQIS LAEYSGLIFVVLFGVWWFDEVPDSLTLVGIGLIIFPLMPKAWLKNLRGK
Sequences:
>Translated_289_residues MTQLKPQISPTNMAILLLVLGNLMASLSDVAVKVLEGGVSPFQYIFIRQLVSLALIFPFWIKQPSAERQISNIKMTAIRA HVVLIGSGCMVVSITYLSLATANAIFYTAPLIMIPLSMLLLKEKPSTKKIIQTLIGFLGVLIILRPSQFHWAAIFALGTA ITLALFNILIRRIPSEQSVITTLLWTTLLSLPVSGTLAFLYWQPLTLHAFFWVALSASCIITYNGLATMAYKKAPATQIS LAEYSGLIFVVLFGVWWFDEVPDSLTLVGIGLIIFPLMPKAWLKNLRGK >Mature_288_residues TQLKPQISPTNMAILLLVLGNLMASLSDVAVKVLEGGVSPFQYIFIRQLVSLALIFPFWIKQPSAERQISNIKMTAIRAH VVLIGSGCMVVSITYLSLATANAIFYTAPLIMIPLSMLLLKEKPSTKKIIQTLIGFLGVLIILRPSQFHWAAIFALGTAI TLALFNILIRRIPSEQSVITTLLWTTLLSLPVSGTLAFLYWQPLTLHAFFWVALSASCIITYNGLATMAYKKAPATQISL AEYSGLIFVVLFGVWWFDEVPDSLTLVGIGLIIFPLMPKAWLKNLRGK
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31910; Mature: 31779
Theoretical pI: Translated: 10.36; Mature: 10.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQLKPQISPTNMAILLLVLGNLMASLSDVAVKVLEGGVSPFQYIFIRQLVSLALIFPFW CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH IKQPSAERQISNIKMTAIRAHVVLIGSGCMVVSITYLSLATANAIFYTAPLIMIPLSMLL HCCCCHHHHHHHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKEKPSTKKIIQTLIGFLGVLIILRPSQFHWAAIFALGTAITLALFNILIRRIPSEQSVI HCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH TTLLWTTLLSLPVSGTLAFLYWQPLTLHAFFWVALSASCIITYNGLATMAYKKAPATQIS HHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCEEE LAEYSGLIFVVLFGVWWFDEVPDSLTLVGIGLIIFPLMPKAWLKNLRGK HHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCC >Mature Secondary Structure TQLKPQISPTNMAILLLVLGNLMASLSDVAVKVLEGGVSPFQYIFIRQLVSLALIFPFW CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH IKQPSAERQISNIKMTAIRAHVVLIGSGCMVVSITYLSLATANAIFYTAPLIMIPLSMLL HCCCCHHHHHHHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKEKPSTKKIIQTLIGFLGVLIILRPSQFHWAAIFALGTAITLALFNILIRRIPSEQSVI HCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH TTLLWTTLLSLPVSGTLAFLYWQPLTLHAFFWVALSASCIITYNGLATMAYKKAPATQIS HHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCEEE LAEYSGLIFVVLFGVWWFDEVPDSLTLVGIGLIIFPLMPKAWLKNLRGK HHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA