Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209693992

Identifier: 209693992

GI number: 209693992

Start: 429880

End: 430272

Strand: Direct

Name: 209693992

Synonym: VSAL_I0390

Alternate gene names: NA

Gene position: 429880-430272 (Clockwise)

Preceding gene: 209693990

Following gene: 209693993

Centisome position: 12.93

GC content: 27.74

Gene sequence:

>393_bases
ATGGAAAAAAAACATTCAGCTTTAAGTGACAATGTTGAGACTGAAAACCAACAATATAATTTCAATAAATCTTTGGCTTA
CGCGTTAATGGATAGTAGACGTGGTCATGTAATGTTAAGAAAATTCGTACTTGATTTATGTGAAAAATCTAGGTTAATTA
CAGCCGATGATGAAACAAAAAAAACCTTAAAATATAGATGGTTAATAGATGTTATTGAGTTGAATATAAAAACAATAGAG
TTACTTGAATTGTCTGATTCAGGGGATTATACATACAATTCGATTGAAGATATGAAAGTATCTATAGAAGCAAAATCGAT
TATTATTGTGAAAGATATTGTAAGACGAATTATTCATACTCCAATGTATTTTCCTATAAACAAGGATAAATAA

Upstream 100 bases:

>100_bases
CGCTTTCGTTGTCTCTGGTAAGAGGGTGGCCCTCTTAACTCCCATCAGCTTTTCTTATATTTGAATTTTTTGTCACTAGT
TAGTATCGTTGAATAAAATT

Downstream 100 bases:

>100_bases
GTTAGTCGTGAAGTGATATAAACATATATAGATAAGGAAAATTAGTTGATTACCTCCCAATTAGACAGTGTTGAAAGTGC
TAATTTGATTAATAGCGATT

Product: phage protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MEKKHSALSDNVETENQQYNFNKSLAYALMDSRRGHVMLRKFVLDLCEKSRLITADDETKKTLKYRWLIDVIELNIKTIE
LLELSDSGDYTYNSIEDMKVSIEAKSIIIVKDIVRRIIHTPMYFPINKDK

Sequences:

>Translated_130_residues
MEKKHSALSDNVETENQQYNFNKSLAYALMDSRRGHVMLRKFVLDLCEKSRLITADDETKKTLKYRWLIDVIELNIKTIE
LLELSDSGDYTYNSIEDMKVSIEAKSIIIVKDIVRRIIHTPMYFPINKDK
>Mature_130_residues
MEKKHSALSDNVETENQQYNFNKSLAYALMDSRRGHVMLRKFVLDLCEKSRLITADDETKKTLKYRWLIDVIELNIKTIE
LLELSDSGDYTYNSIEDMKVSIEAKSIIIVKDIVRRIIHTPMYFPINKDK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15287; Mature: 15287

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS00867 CPSASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKHSALSDNVETENQQYNFNKSLAYALMDSRRGHVMLRKFVLDLCEKSRLITADDETK
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCCCHH
KTLKYRWLIDVIELNIKTIELLELSDSGDYTYNSIEDMKVSIEAKSIIIVKDIVRRIIHT
HHHHHHHEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEHHHHHHHHHCC
PMYFPINKDK
CCEECCCCCC
>Mature Secondary Structure
MEKKHSALSDNVETENQQYNFNKSLAYALMDSRRGHVMLRKFVLDLCEKSRLITADDETK
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCCCHH
KTLKYRWLIDVIELNIKTIELLELSDSGDYTYNSIEDMKVSIEAKSIIIVKDIVRRIIHT
HHHHHHHEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEHHHHHHHHHCC
PMYFPINKDK
CCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA