| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is folA [H]
Identifier: 209693969
GI number: 209693969
Start: 400556
End: 401077
Strand: Direct
Name: folA [H]
Synonym: VSAL_I0366
Alternate gene names: 209693969
Gene position: 400556-401077 (Clockwise)
Preceding gene: 209693968
Following gene: 209693975
Centisome position: 12.05
GC content: 38.7
Gene sequence:
>522_bases ATGAAGATTAGTATGATTGCTGCCATGGCAAATAATGGGAAAATAGATAAATCGTGCAATCTGTCAAATTCTCAATCTCG AATTATTGGCAAAAATAATCAAATGCCATGGCATTTACCTGCTGATTTTGCATGGTTTAAGCAATGTACTATGGGAAAGC CAATTGTGATGGGGCGTAAAACCTATGAATCCATTGGTCGTCCATTACCGGGACGCTTAAATATTGTATTAAGCCGTGAT GCGAGTTTGAAGATTGAAGGTGTCACTTGTGTGACTTCAATTGATGAAGCGAAGCAAGTCGCCGGTGATATTGAAGAACT AATGATTATTGGTGGTGGCTCTATCTATCAAGCGTGTTTACCTGATGCTGATACTCTTTATCTTACCTTTATTGATGCTG ATATTGATGGAGATACTCAATTCCCTGATTGGGGAGAGGGGTGGAACCAGACGCATTCTGAGATGTATTTGAAAGATGAA AAGAATCAGTACGATATGGAATTTGTAGTGTTAGAAAGGTAA
Upstream 100 bases:
>100_bases GTTTGCTGTTTTACCGTAGAAAATCTATAGTGTGATAAAGGTATTAATTTGTTATTCTACGGACCAGTTTTTTTGCTTAA TAAAATGAGATTTAGAATAA
Downstream 100 bases:
>100_bases GAGCAGGATGAACTTCGTTCTAAAGGGCGCTTCGCTTAAGGAGGCTGCGCCCTGAGGAATAAAAGCAAAGAGAAAAGCAG GTTTCAGGAGCTCTCGCTTT
Product: dihydrofolate reductase type 3
Products: NA
Alternate protein names: Dihydrofolate reductase type III [H]
Number of amino acids: Translated: 173; Mature: 173
Protein sequence:
>173_residues MKISMIAAMANNGKIDKSCNLSNSQSRIIGKNNQMPWHLPADFAWFKQCTMGKPIVMGRKTYESIGRPLPGRLNIVLSRD ASLKIEGVTCVTSIDEAKQVAGDIEELMIIGGGSIYQACLPDADTLYLTFIDADIDGDTQFPDWGEGWNQTHSEMYLKDE KNQYDMEFVVLER
Sequences:
>Translated_173_residues MKISMIAAMANNGKIDKSCNLSNSQSRIIGKNNQMPWHLPADFAWFKQCTMGKPIVMGRKTYESIGRPLPGRLNIVLSRD ASLKIEGVTCVTSIDEAKQVAGDIEELMIIGGGSIYQACLPDADTLYLTFIDADIDGDTQFPDWGEGWNQTHSEMYLKDE KNQYDMEFVVLER >Mature_173_residues MKISMIAAMANNGKIDKSCNLSNSQSRIIGKNNQMPWHLPADFAWFKQCTMGKPIVMGRKTYESIGRPLPGRLNIVLSRD ASLKIEGVTCVTSIDEAKQVAGDIEELMIIGGGSIYQACLPDADTLYLTFIDADIDGDTQFPDWGEGWNQTHSEMYLKDE KNQYDMEFVVLER
Specific function: Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis [H]
COG id: COG0262
COG function: function code H; Dihydrofolate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 DHFR (dihydrofolate reductase) domain [H]
Homologues:
Organism=Homo sapiens, GI4503323, Length=146, Percent_Identity=34.2465753424658, Blast_Score=73, Evalue=1e-13, Organism=Escherichia coli, GI1786233, Length=172, Percent_Identity=48.2558139534884, Blast_Score=163, Evalue=5e-42, Organism=Drosophila melanogaster, GI116008026, Length=166, Percent_Identity=30.7228915662651, Blast_Score=68, Evalue=2e-12, Organism=Drosophila melanogaster, GI24647458, Length=166, Percent_Identity=30.7228915662651, Blast_Score=68, Evalue=2e-12,
Paralogues:
None
Copy number: 640 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 10,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012259 - InterPro: IPR017925 - InterPro: IPR001796 [H]
Pfam domain/function: PF00186 DHFR_1 [H]
EC number: =1.5.1.3 [H]
Molecular weight: Translated: 19373; Mature: 19373
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 7.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 7.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKISMIAAMANNGKIDKSCNLSNSQSRIIGKNNQMPWHLPADFAWFKQCTMGKPIVMGRK CCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEECCCCHHHHHHHCCCCCEEECCH TYESIGRPLPGRLNIVLSRDASLKIEGVTCVTSIDEAKQVAGDIEELMIIGGGSIYQACL HHHHHCCCCCCEEEEEEECCCCEEECCEEEEECHHHHHHHHCCCEEEEEECCCCEEHHHC PDADTLYLTFIDADIDGDTQFPDWGEGWNQTHSEMYLKDEKNQYDMEFVVLER CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEC >Mature Secondary Structure MKISMIAAMANNGKIDKSCNLSNSQSRIIGKNNQMPWHLPADFAWFKQCTMGKPIVMGRK CCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEECCCCHHHHHHHCCCCCEEECCH TYESIGRPLPGRLNIVLSRDASLKIEGVTCVTSIDEAKQVAGDIEELMIIGGGSIYQACL HHHHHCCCCCCEEEEEEECCCCEEECCEEEEECHHHHHHHHCCCEEEEEECCCCEEHHHC PDADTLYLTFIDADIDGDTQFPDWGEGWNQTHSEMYLKDEKNQYDMEFVVLER CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2840679; 6371010 [H]