| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is fusA [H]
Identifier: 209693918
GI number: 209693918
Start: 354867
End: 356954
Strand: Direct
Name: fusA [H]
Synonym: VSAL_I0312
Alternate gene names: 209693918
Gene position: 354867-356954 (Clockwise)
Preceding gene: 209693917
Following gene: 209693919
Centisome position: 10.67
GC content: 43.58
Gene sequence:
>2088_bases GTGGCTCGAAATACACCTATTGAGCGCTACCGTAATATCGGTATCTGTGCCCACGTAGATGCAGGTAAAACTACAACTAC TGAGCGTATTCTGTTCTATACTGGCCTTTCTCATAAAATCGGCGAAGTTCATGATGGTGCTGCTACCATGGATTGGATGG AGCAAGAGCAAGAGCGTGGTATCACGATCACTTCAGCTGCAACGACCACCTTTTGGCGTGGTATGGATGCACAATTCCAA GATCACCGTATTAATATTATTGATACTCCAGGGCACGTTGACTTCACTATCGAAGTAGAGCGTTCACTGCGTGTTCTTGA CGGTGCTGTTGTTGTATTTTGTGCTTCATCAGGTGTTGAACCTCAATCTGAAACCGTATGGCGTCAAGCTGATAAATACG GAGTGCCTCGTATCGTCTTCGTTAATAAGATGGACCGTGCTGGCGCAGATTTCTTACGTGTGATTGAACAAATTAAAAAT CGTCTTGGTGCAAATCCTGTTCCTATCCAATTAAACATTGGTGCAGAAGAAGATTTTGGTGGGGTAATTGACCTTATCAA GATGAAAACAATCAACTGGAATGAAGCCGATCAAGGCATGACTTTCTCTTATGAAGAGATTCCAGCTGATATGCAAGAGC TTGCAGACGAATGGCGCCTAAACTTAGTTGAAGCGGCAGCGGAAGCGTCAGAAGAACTGATGGATAAATATCTTGAAGGT GAAGAACTGACAGAGGCTGAAATTAAAAATGCATTACGCACACGAACTATCAATAATGAGATTGTTCTTGCGACTTGTGG CTCTGCATTTAAGAATAAAGGGGTTCAAGCGGTACTTGATGCCGTTGTTGAATTCCTACCTGCACCTATTGATGTTCCTG CAATCAAAGGTCTTGATGAAAATGACAATGAAGTTGAGCGTCATGCTGACGACAACGAACCATTTGCAGCACTAGCATTT AAAATTGCAACAGACCCGTTTGTAGGTACGCTGACCTTTATTCGTGTTTATTCTGGTGTCGTTAATTCTGGTGATGGCGT ATATAACTCAGTAAAACAAAAACGTGAACGTTTTGGCCGTATTGTTCAGCTTCATGCAAATAAGCGTGAAGAAGTGAAAG AAATACGAGCGGGTGATATCGCTGCTGCAATTGGTTTAAAAGACGTAACTACAGGTGATACTCTGTGTGATCAGAACGCG AAAGTGGTTCTAGAACGTATGGAATTCCCTGAACCAGTGATTCAAATTGCGGTTGAACCAAGAACGCAAGCTGACCAAGA AAAAATGGGTGTAGCGCTTGGTAAATTAGCGGCAGAAGATCCTTCTTTCCGTGTTGAAACGGACAAAGAATCAGGACAAA CATTGATTTCTGGTATGGGTGAACTACACCTAGATATCATTGTTGATCGAATGAAGCGTGAATTTAGCGTTGAATGTAAC GTAGGTAAACCTCAAGTTGCTTACCGTGAAACTATCCGTGGTAAAGCGGAAGTTGAAGGTAAATTCATTCGTCAATCTGG CGGTCGCGGTCAATATGGTCACGTATGGCTAAGAATCGAGCCAGCTGAACATGATGCAGGTTTCGTATTCGTAGATGAAA CTGTTGGTGGTAGTGTTCCTCGTGAATATATCAGCTCAGTAGCAAAAGGTATCGAAGAGCAAATGCATAACGGTGTGTTA GCAGGTTATCCTGTTCTCGACGTTAAAGCGACGCTGTTTGATGGTTCTTACCACGATGTTGACTCCAATGAAATGGCGTT CAGAATCGCGGGTTCAATGGCGTTCAAGAACGGTGCACTAGAAGCGCAGCCTGTTATTCTTGAACCTACAATGAAAGTTG AAATAACCACTCCAGAAGATTGGATGGGTGACGTGGTTGGTGATTTAAATCGCCGCCGTGGAATGATTGAAGGTATGGAC GACGGTGTCGCTGGCCTGAAAATTATTCGTGCTCAAGTACCACTTTCTGAAATGTTTGGTTATGCAACATCTCTTCGTTC GGCGACACAAGGCCGTGCATCATATTCGATGGAATTCTCAGAGTACGGCGAAGTACCTAAGAATGTCGCGGATAGAATTA TGGGGTGA
Upstream 100 bases:
>100_bases CTTCCTTCTTTCCCATTTAGTTATACACTTAGTTATTATTGCTATTTCAGTGCAATTGCGTCGGAAATAGCAATAATCCC TAAGATAAGAGGATACAACT
Downstream 100 bases:
>100_bases ACGCGGATAAAATACTTTACACTATTGCGCCAAAGTCAATTGACGCATAAAATAGCAAATTCTGGCGCGCCTTATCATTG TCGGATAGGGTGCCTCATAA
Product: elongation factor G
Products: NA
Alternate protein names: EF-G 1 [H]
Number of amino acids: Translated: 695; Mature: 694
Protein sequence:
>695_residues MARNTPIERYRNIGICAHVDAGKTTTTERILFYTGLSHKIGEVHDGAATMDWMEQEQERGITITSAATTTFWRGMDAQFQ DHRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCASSGVEPQSETVWRQADKYGVPRIVFVNKMDRAGADFLRVIEQIKN RLGANPVPIQLNIGAEEDFGGVIDLIKMKTINWNEADQGMTFSYEEIPADMQELADEWRLNLVEAAAEASEELMDKYLEG EELTEAEIKNALRTRTINNEIVLATCGSAFKNKGVQAVLDAVVEFLPAPIDVPAIKGLDENDNEVERHADDNEPFAALAF KIATDPFVGTLTFIRVYSGVVNSGDGVYNSVKQKRERFGRIVQLHANKREEVKEIRAGDIAAAIGLKDVTTGDTLCDQNA KVVLERMEFPEPVIQIAVEPRTQADQEKMGVALGKLAAEDPSFRVETDKESGQTLISGMGELHLDIIVDRMKREFSVECN VGKPQVAYRETIRGKAEVEGKFIRQSGGRGQYGHVWLRIEPAEHDAGFVFVDETVGGSVPREYISSVAKGIEEQMHNGVL AGYPVLDVKATLFDGSYHDVDSNEMAFRIAGSMAFKNGALEAQPVILEPTMKVEITTPEDWMGDVVGDLNRRRGMIEGMD DGVAGLKIIRAQVPLSEMFGYATSLRSATQGRASYSMEFSEYGEVPKNVADRIMG
Sequences:
>Translated_695_residues MARNTPIERYRNIGICAHVDAGKTTTTERILFYTGLSHKIGEVHDGAATMDWMEQEQERGITITSAATTTFWRGMDAQFQ DHRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCASSGVEPQSETVWRQADKYGVPRIVFVNKMDRAGADFLRVIEQIKN RLGANPVPIQLNIGAEEDFGGVIDLIKMKTINWNEADQGMTFSYEEIPADMQELADEWRLNLVEAAAEASEELMDKYLEG EELTEAEIKNALRTRTINNEIVLATCGSAFKNKGVQAVLDAVVEFLPAPIDVPAIKGLDENDNEVERHADDNEPFAALAF KIATDPFVGTLTFIRVYSGVVNSGDGVYNSVKQKRERFGRIVQLHANKREEVKEIRAGDIAAAIGLKDVTTGDTLCDQNA KVVLERMEFPEPVIQIAVEPRTQADQEKMGVALGKLAAEDPSFRVETDKESGQTLISGMGELHLDIIVDRMKREFSVECN VGKPQVAYRETIRGKAEVEGKFIRQSGGRGQYGHVWLRIEPAEHDAGFVFVDETVGGSVPREYISSVAKGIEEQMHNGVL AGYPVLDVKATLFDGSYHDVDSNEMAFRIAGSMAFKNGALEAQPVILEPTMKVEITTPEDWMGDVVGDLNRRRGMIEGMD DGVAGLKIIRAQVPLSEMFGYATSLRSATQGRASYSMEFSEYGEVPKNVADRIMG >Mature_694_residues ARNTPIERYRNIGICAHVDAGKTTTTERILFYTGLSHKIGEVHDGAATMDWMEQEQERGITITSAATTTFWRGMDAQFQD HRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCASSGVEPQSETVWRQADKYGVPRIVFVNKMDRAGADFLRVIEQIKNR LGANPVPIQLNIGAEEDFGGVIDLIKMKTINWNEADQGMTFSYEEIPADMQELADEWRLNLVEAAAEASEELMDKYLEGE ELTEAEIKNALRTRTINNEIVLATCGSAFKNKGVQAVLDAVVEFLPAPIDVPAIKGLDENDNEVERHADDNEPFAALAFK IATDPFVGTLTFIRVYSGVVNSGDGVYNSVKQKRERFGRIVQLHANKREEVKEIRAGDIAAAIGLKDVTTGDTLCDQNAK VVLERMEFPEPVIQIAVEPRTQADQEKMGVALGKLAAEDPSFRVETDKESGQTLISGMGELHLDIIVDRMKREFSVECNV GKPQVAYRETIRGKAEVEGKFIRQSGGRGQYGHVWLRIEPAEHDAGFVFVDETVGGSVPREYISSVAKGIEEQMHNGVLA GYPVLDVKATLFDGSYHDVDSNEMAFRIAGSMAFKNGALEAQPVILEPTMKVEITTPEDWMGDVVGDLNRRRGMIEGMDD GVAGLKIIRAQVPLSEMFGYATSLRSATQGRASYSMEFSEYGEVPKNVADRIMG
Specific function: Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and
COG id: COG0480
COG function: function code J; Translation elongation factors (GTPases)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. EF-G/EF-2 subfamily [H]
Homologues:
Organism=Homo sapiens, GI18390331, Length=690, Percent_Identity=43.6231884057971, Blast_Score=565, Evalue=1e-161, Organism=Homo sapiens, GI19923640, Length=719, Percent_Identity=38.3866481223922, Blast_Score=454, Evalue=1e-127, Organism=Homo sapiens, GI25306283, Length=459, Percent_Identity=40.958605664488, Blast_Score=313, Evalue=3e-85, Organism=Homo sapiens, GI25306287, Length=297, Percent_Identity=48.8215488215488, Blast_Score=260, Evalue=2e-69, Organism=Homo sapiens, GI4503483, Length=427, Percent_Identity=24.824355971897, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI157426893, Length=153, Percent_Identity=36.6013071895425, Blast_Score=101, Evalue=3e-21, Organism=Homo sapiens, GI94966754, Length=138, Percent_Identity=39.1304347826087, Blast_Score=95, Evalue=2e-19, Organism=Homo sapiens, GI310132016, Length=120, Percent_Identity=39.1666666666667, Blast_Score=80, Evalue=5e-15, Organism=Homo sapiens, GI310110807, Length=120, Percent_Identity=39.1666666666667, Blast_Score=80, Evalue=5e-15, Organism=Homo sapiens, GI310123363, Length=120, Percent_Identity=39.1666666666667, Blast_Score=80, Evalue=5e-15, Organism=Homo sapiens, GI217272894, Length=139, Percent_Identity=33.8129496402878, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI217272892, Length=139, Percent_Identity=33.8129496402878, Blast_Score=72, Evalue=1e-12, Organism=Escherichia coli, GI1789738, Length=700, Percent_Identity=73.4285714285714, Blast_Score=1070, Evalue=0.0, Organism=Escherichia coli, GI1790835, Length=487, Percent_Identity=27.5154004106776, Blast_Score=147, Evalue=2e-36, Organism=Escherichia coli, GI48994988, Length=152, Percent_Identity=42.1052631578947, Blast_Score=111, Evalue=1e-25, Organism=Escherichia coli, GI1788922, Length=154, Percent_Identity=39.6103896103896, Blast_Score=100, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17533571, Length=700, Percent_Identity=40.2857142857143, Blast_Score=506, Evalue=1e-143, Organism=Caenorhabditis elegans, GI17556745, Length=717, Percent_Identity=29.1492329149233, Blast_Score=308, Evalue=4e-84, Organism=Caenorhabditis elegans, GI17506493, Length=446, Percent_Identity=25.7847533632287, Blast_Score=103, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17557151, Length=167, Percent_Identity=38.3233532934132, Blast_Score=102, Evalue=8e-22, Organism=Caenorhabditis elegans, GI71988819, Length=147, Percent_Identity=34.6938775510204, Blast_Score=80, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71988811, Length=147, Percent_Identity=34.6938775510204, Blast_Score=80, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17552882, Length=165, Percent_Identity=32.7272727272727, Blast_Score=70, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6323098, Length=692, Percent_Identity=42.3410404624277, Blast_Score=559, Evalue=1e-160, Organism=Saccharomyces cerevisiae, GI6322359, Length=793, Percent_Identity=32.156368221942, Blast_Score=378, Evalue=1e-105, Organism=Saccharomyces cerevisiae, GI6324707, Length=491, Percent_Identity=25.050916496945, Blast_Score=107, Evalue=5e-24, Organism=Saccharomyces cerevisiae, GI6320593, Length=491, Percent_Identity=25.050916496945, Blast_Score=107, Evalue=5e-24, Organism=Saccharomyces cerevisiae, GI6323320, Length=155, Percent_Identity=36.7741935483871, Blast_Score=101, Evalue=5e-22, Organism=Saccharomyces cerevisiae, GI6324166, Length=174, Percent_Identity=35.0574712643678, Blast_Score=85, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6324761, Length=135, Percent_Identity=34.8148148148148, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24582462, Length=712, Percent_Identity=43.2584269662921, Blast_Score=572, Evalue=1e-163, Organism=Drosophila melanogaster, GI221458488, Length=727, Percent_Identity=33.1499312242091, Blast_Score=368, Evalue=1e-102, Organism=Drosophila melanogaster, GI24585711, Length=811, Percent_Identity=24.2909987669544, Blast_Score=154, Evalue=2e-37, Organism=Drosophila melanogaster, GI24585713, Length=811, Percent_Identity=24.2909987669544, Blast_Score=154, Evalue=2e-37, Organism=Drosophila melanogaster, GI24585709, Length=811, Percent_Identity=24.2909987669544, Blast_Score=154, Evalue=2e-37, Organism=Drosophila melanogaster, GI78706572, Length=204, Percent_Identity=32.843137254902, Blast_Score=105, Evalue=1e-22, Organism=Drosophila melanogaster, GI28574573, Length=171, Percent_Identity=35.0877192982456, Blast_Score=90, Evalue=7e-18, Organism=Drosophila melanogaster, GI21357743, Length=136, Percent_Identity=31.6176470588235, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: 1080 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2520 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 7984 Molecules/Cell In: Growth Phase, Gl
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR000795 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR005225 - InterPro: IPR004540 - InterPro: IPR000640 - InterPro: IPR005517 - InterPro: IPR004161 - InterPro: IPR009000 [H]
Pfam domain/function: PF00679 EFG_C; PF03764 EFG_IV; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: NA
Molecular weight: Translated: 76841; Mature: 76710
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARNTPIERYRNIGICAHVDAGKTTTTERILFYTGLSHKIGEVHDGAATMDWMEQEQERG CCCCCCHHHHCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCC ITITSAATTTFWRGMDAQFQDHRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCASSGVE EEEEECHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCHHHHHCCEEEEEEECCCCC PQSETVWRQADKYGVPRIVFVNKMDRAGADFLRVIEQIKNRLGANPVPIQLNIGAEEDFG CCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC GVIDLIKMKTINWNEADQGMTFSYEEIPADMQELADEWRLNLVEAAAEASEELMDKYLEG HHEEEHEEEECCCCCCCCCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC EELTEAEIKNALRTRTINNEIVLATCGSAFKNKGVQAVLDAVVEFLPAPIDVPAIKGLDE CCCHHHHHHHHHHHEECCCCEEEEECCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCC NDNEVERHADDNEPFAALAFKIATDPFVGTLTFIRVYSGVVNSGDGVYNSVKQKRERFGR CCCHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC IVQLHANKREEVKEIRAGDIAAAIGLKDVTTGDTLCDQNAKVVLERMEFPEPVIQIAVEP EEEEECCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECC RTQADQEKMGVALGKLAAEDPSFRVETDKESGQTLISGMGELHLDIIVDRMKREFSVECN CCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHEEEEEC VGKPQVAYRETIRGKAEVEGKFIRQSGGRGQYGHVWLRIEPAEHDAGFVFVDETVGGSVP CCCCCHHHHHHHCCCHHCCCHHEECCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCC REYISSVAKGIEEQMHNGVLAGYPVLDVKATLFDGSYHDVDSNEMAFRIAGSMAFKNGAL HHHHHHHHHHHHHHHHCCEEECCCEEEEEEEEECCCCCCCCCCCEEEEEECCHHCCCCCC EAQPVILEPTMKVEITTPEDWMGDVVGDLNRRRGMIEGMDDGVAGLKIIRAQVPLSEMFG CCCCEEECCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHEECCCCHHHHHH YATSLRSATQGRASYSMEFSEYGEVPKNVADRIMG HHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHCC >Mature Secondary Structure ARNTPIERYRNIGICAHVDAGKTTTTERILFYTGLSHKIGEVHDGAATMDWMEQEQERG CCCCCHHHHCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCC ITITSAATTTFWRGMDAQFQDHRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCASSGVE EEEEECHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCHHHHHCCEEEEEEECCCCC PQSETVWRQADKYGVPRIVFVNKMDRAGADFLRVIEQIKNRLGANPVPIQLNIGAEEDFG CCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC GVIDLIKMKTINWNEADQGMTFSYEEIPADMQELADEWRLNLVEAAAEASEELMDKYLEG HHEEEHEEEECCCCCCCCCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC EELTEAEIKNALRTRTINNEIVLATCGSAFKNKGVQAVLDAVVEFLPAPIDVPAIKGLDE CCCHHHHHHHHHHHEECCCCEEEEECCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCC NDNEVERHADDNEPFAALAFKIATDPFVGTLTFIRVYSGVVNSGDGVYNSVKQKRERFGR CCCHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC IVQLHANKREEVKEIRAGDIAAAIGLKDVTTGDTLCDQNAKVVLERMEFPEPVIQIAVEP EEEEECCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECC RTQADQEKMGVALGKLAAEDPSFRVETDKESGQTLISGMGELHLDIIVDRMKREFSVECN CCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHEEEEEC VGKPQVAYRETIRGKAEVEGKFIRQSGGRGQYGHVWLRIEPAEHDAGFVFVDETVGGSVP CCCCCHHHHHHHCCCHHCCCHHEECCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCC REYISSVAKGIEEQMHNGVLAGYPVLDVKATLFDGSYHDVDSNEMAFRIAGSMAFKNGAL HHHHHHHHHHHHHHHHCCEEECCCEEEEEEEEECCCCCCCCCCCEEEEEECCHHCCCCCC EAQPVILEPTMKVEITTPEDWMGDVVGDLNRRRGMIEGMDDGVAGLKIIRAQVPLSEMFG CCCCEEECCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHEECCCCHHHHHH YATSLRSATQGRASYSMEFSEYGEVPKNVADRIMG HHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12620739 [H]