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The map label for this gene is gfcB [H]

Identifier: 209693882

GI number: 209693882

Start: 321935

End: 322600

Strand: Reverse

Name: gfcB [H]

Synonym: VSAL_I0274

Alternate gene names: 209693882

Gene position: 322600-321935 (Counterclockwise)

Preceding gene: 209693883

Following gene: 209693881

Centisome position: 9.7

GC content: 37.24

Gene sequence:

>666_bases
ATGAAAAATATTACTCTATATTTACTTACCTTTGGCTGCTTTTTATTAACTGGCTGTTCACAAAAAATTCAAGATGTACA
GTCGACGTTTAATGAGGCTGTATTTGGTATGAGTGATGTTGAACTTTCTGCCGAGCATATTAATGAACTGCCTTATGCTA
GCGCTTTTGTTAAAATCAATGACAGTCACAACATATTTATGGTACTTGCTTTAGCTGAAAGTAACCCGACAACTGGTGTA
ACTCAGCTTAAGTGGCTCTCCTCTGACAACGTAATGATCGTCACTGAGAATGGACGTATTATAAAAACCCTTGCCCTACC
TAATTACAATTTAATCGCATTAAACTCTGTTGCCTTACCTAAATTAAGCCAACAACTTACCGCGCCACAACAATGGCAAG
CGGTTTATGATTGGATGCCAGATTATCGATATCATTACCAAGCAAGTATTCATGCTCTACCTGGTGAAAAAAGTACATTA
ACCTCTCTTGTTTGGACAAAAGAAGTGACAGCTATCCAGGAGTTAGTCTCTTTTTCTGCCTTAGACTTAACGTTTACTAA
TCAATACTGGTTAGATAATACTGGCGAGGTAGTAAAAACTCGTCAATTTATTGGTCCAAACATGGCCACCATTGAAATGA
CTTTCCTTAAACCTTTTCGTTCTTAA

Upstream 100 bases:

>100_bases
ATCTGTTACTCAATAAGCCATAATAAGCTAAAAACAAAGCCATCAACACCGTGTTGATGGCTTTTTTTATATTTTTAATA
AATTACCGAAAGTAGAATTC

Downstream 100 bases:

>100_bases
TTAGGAGTGACAATGCGTATTTTTGGTTTTCTCTTTTTATCACTCTGCTCTTTCTTTTCTTATGCTAGTGACTCTGCACT
CTCTATTACATTAGTTAAAA

Product: lipoprotein

Products: NA

Alternate protein names: Group 4 capsule protein B homolog [H]

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MKNITLYLLTFGCFLLTGCSQKIQDVQSTFNEAVFGMSDVELSAEHINELPYASAFVKINDSHNIFMVLALAESNPTTGV
TQLKWLSSDNVMIVTENGRIIKTLALPNYNLIALNSVALPKLSQQLTAPQQWQAVYDWMPDYRYHYQASIHALPGEKSTL
TSLVWTKEVTAIQELVSFSALDLTFTNQYWLDNTGEVVKTRQFIGPNMATIEMTFLKPFRS

Sequences:

>Translated_221_residues
MKNITLYLLTFGCFLLTGCSQKIQDVQSTFNEAVFGMSDVELSAEHINELPYASAFVKINDSHNIFMVLALAESNPTTGV
TQLKWLSSDNVMIVTENGRIIKTLALPNYNLIALNSVALPKLSQQLTAPQQWQAVYDWMPDYRYHYQASIHALPGEKSTL
TSLVWTKEVTAIQELVSFSALDLTFTNQYWLDNTGEVVKTRQFIGPNMATIEMTFLKPFRS
>Mature_221_residues
MKNITLYLLTFGCFLLTGCSQKIQDVQSTFNEAVFGMSDVELSAEHINELPYASAFVKINDSHNIFMVLALAESNPTTGV
TQLKWLSSDNVMIVTENGRIIKTLALPNYNLIALNSVALPKLSQQLTAPQQWQAVYDWMPDYRYHYQASIHALPGEKSTL
TSLVWTKEVTAIQELVSFSALDLTFTNQYWLDNTGEVVKTRQFIGPNMATIEMTFLKPFRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjbF [H]

Homologues:

Organism=Escherichia coli, GI1787221, Length=221, Percent_Identity=29.8642533936652, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082360, Length=221, Percent_Identity=29.4117647058824, Blast_Score=98, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021308 [H]

Pfam domain/function: PF11102 DUF2886 [H]

EC number: NA

Molecular weight: Translated: 24928; Mature: 24928

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNITLYLLTFGCFLLTGCSQKIQDVQSTFNEAVFGMSDVELSAEHINELPYASAFVKIN
CCCEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEECHHHHHCCCCCEEEEEEC
DSHNIFMVLALAESNPTTGVTQLKWLSSDNVMIVTENGRIIKTLALPNYNLIALNSVALP
CCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEECCCCCC
KLSQQLTAPQQWQAVYDWMPDYRYHYQASIHALPGEKSTLTSLVWTKEVTAIQELVSFSA
HHHHHCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
LDLTFTNQYWLDNTGEVVKTRQFIGPNMATIEMTFLKPFRS
EEEEECCCEEECCCCCHHHHHHHCCCCEEEEEEEEECCCCC
>Mature Secondary Structure
MKNITLYLLTFGCFLLTGCSQKIQDVQSTFNEAVFGMSDVELSAEHINELPYASAFVKIN
CCCEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEECHHHHHCCCCCEEEEEEC
DSHNIFMVLALAESNPTTGVTQLKWLSSDNVMIVTENGRIIKTLALPNYNLIALNSVALP
CCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEECCCCCC
KLSQQLTAPQQWQAVYDWMPDYRYHYQASIHALPGEKSTLTSLVWTKEVTAIQELVSFSA
HHHHHCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
LDLTFTNQYWLDNTGEVVKTRQFIGPNMATIEMTFLKPFRS
EEEEECCCEEECCCCCHHHHHHHCCCCEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]