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The map label for this gene is rarD [C]

Identifier: 209693835

GI number: 209693835

Start: 267419

End: 268336

Strand: Reverse

Name: rarD [C]

Synonym: VSAL_I0223

Alternate gene names: 209693835

Gene position: 268336-267419 (Counterclockwise)

Preceding gene: 209693840

Following gene: 209693832

Centisome position: 8.07

GC content: 38.24

Gene sequence:

>918_bases
ATGCCGACAACTGAACTTGAACAACAGCGCACCCGACAAGGGATTTTGCTCGCGATTGCTGCTTATACCATGTGGGGCAT
TGCGCCTATTTATTTCAAAACCATTAATAGTGTTTCTCCATTAGAGATCTTAAGTCATCGTGCAATTTGGTCTTTCTTCT
TTTTAGCGGGTCTACTCTGTGTATCTAAAGGTTGGAAAACAGTATTAAACACATTAAAAGACAAACGAAAAATGACCTAT
TTAGTCACGACGGGATTATTGGTCGGAACAAATTGGTTAATCTTTATCTGGGCTGTAAATAACAACCATATGCTCGATGC
CAGTTTGGGTTACTATATTAATCCCTTATTGAATGTTGTATTAGGCATGATCTTTTTGGGTGAGCGTTTACGTAAATTAC
AATGGGTTGCCGTTGCTTGTGCTGCTATTGGCGTCATTGTTCAATTAATTACTTTCGGTTCAATTCCTATCGTCGCTTTA
GCACTTGCGTGTAGTTTTGGGTTTTATGGTTTATTACGAAAAAAAGTCGCTATGGATGCTCAATCCGGACTGTTTATTGA
AACCTTAGTAATGCTACCAATGGCCGCCATTTATTTATTATTCATTGCTGATTCTGCAACGTCTAGTTTTACGAATAACG
CAATGAGCCTCAATCTCCTTCTTATTGCGGCAGGTATCATCACGACCATTCCATTATTATGCTTTACTGGAGCAGCCACA
CGATTAAAGCTCTCGACGTTAGGGTTCTTCCAATATATTGGTCCTAGTTTAATGTTCCTGCTGGCGGTTGGTTTATATGG
TGAAGAATTTAGTACAGATAAAGCCATTACTTTTGCTTTTATCTGGAGTGCATTAATTCTGTTTACGGGCGATGCGCTTT
TGTATAAAAAAAGAAACCAAAAAATTAACACAAAATAA

Upstream 100 bases:

>100_bases
GGCACATTCGACATCCATCCTTATACTCAAATCTATAATTTCGCACTAACGTATCCATGTACGTTCATCTATTCTCCTTC
TCATTTCACTGAAGAATCCT

Downstream 100 bases:

>100_bases
ACATTTGATTTATTTTGTGAGACGTGACTCGAAAATGAGAATAAAGTTATTGAAATTATAAAATAACCCCTGAAGTAAAC
TTCATAATATGTGATACTGC

Product: chloramphenicol-sensitive protein RarD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MPTTELEQQRTRQGILLAIAAYTMWGIAPIYFKTINSVSPLEILSHRAIWSFFFLAGLLCVSKGWKTVLNTLKDKRKMTY
LVTTGLLVGTNWLIFIWAVNNNHMLDASLGYYINPLLNVVLGMIFLGERLRKLQWVAVACAAIGVIVQLITFGSIPIVAL
ALACSFGFYGLLRKKVAMDAQSGLFIETLVMLPMAAIYLLFIADSATSSFTNNAMSLNLLLIAAGIITTIPLLCFTGAAT
RLKLSTLGFFQYIGPSLMFLLAVGLYGEEFSTDKAITFAFIWSALILFTGDALLYKKRNQKINTK

Sequences:

>Translated_305_residues
MPTTELEQQRTRQGILLAIAAYTMWGIAPIYFKTINSVSPLEILSHRAIWSFFFLAGLLCVSKGWKTVLNTLKDKRKMTY
LVTTGLLVGTNWLIFIWAVNNNHMLDASLGYYINPLLNVVLGMIFLGERLRKLQWVAVACAAIGVIVQLITFGSIPIVAL
ALACSFGFYGLLRKKVAMDAQSGLFIETLVMLPMAAIYLLFIADSATSSFTNNAMSLNLLLIAAGIITTIPLLCFTGAAT
RLKLSTLGFFQYIGPSLMFLLAVGLYGEEFSTDKAITFAFIWSALILFTGDALLYKKRNQKINTK
>Mature_304_residues
PTTELEQQRTRQGILLAIAAYTMWGIAPIYFKTINSVSPLEILSHRAIWSFFFLAGLLCVSKGWKTVLNTLKDKRKMTYL
VTTGLLVGTNWLIFIWAVNNNHMLDASLGYYINPLLNVVLGMIFLGERLRKLQWVAVACAAIGVIVQLITFGSIPIVALA
LACSFGFYGLLRKKVAMDAQSGLFIETLVMLPMAAIYLLFIADSATSSFTNNAMSLNLLLIAAGIITTIPLLCFTGAATR
LKLSTLGFFQYIGPSLMFLLAVGLYGEEFSTDKAITFAFIWSALILFTGDALLYKKRNQKINTK

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=296, Percent_Identity=61.8243243243243, Blast_Score=383, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33712; Mature: 33581

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTTELEQQRTRQGILLAIAAYTMWGIAPIYFKTINSVSPLEILSHRAIWSFFFLAGLLC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
VSKGWKTVLNTLKDKRKMTYLVTTGLLVGTNWLIFIWAVNNNHMLDASLGYYINPLLNVV
HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEECHHHHHHHHHHHHH
LGMIFLGERLRKLQWVAVACAAIGVIVQLITFGSIPIVALALACSFGFYGLLRKKVAMDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
QSGLFIETLVMLPMAAIYLLFIADSATSSFTNNAMSLNLLLIAAGIITTIPLLCFTGAAT
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
RLKLSTLGFFQYIGPSLMFLLAVGLYGEEFSTDKAITFAFIWSALILFTGDALLYKKRNQ
HEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHEEECCCC
KINTK
CCCCC
>Mature Secondary Structure 
PTTELEQQRTRQGILLAIAAYTMWGIAPIYFKTINSVSPLEILSHRAIWSFFFLAGLLC
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
VSKGWKTVLNTLKDKRKMTYLVTTGLLVGTNWLIFIWAVNNNHMLDASLGYYINPLLNVV
HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEECHHHHHHHHHHHHH
LGMIFLGERLRKLQWVAVACAAIGVIVQLITFGSIPIVALALACSFGFYGLLRKKVAMDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
QSGLFIETLVMLPMAAIYLLFIADSATSSFTNNAMSLNLLLIAAGIITTIPLLCFTGAAT
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
RLKLSTLGFFQYIGPSLMFLLAVGLYGEEFSTDKAITFAFIWSALILFTGDALLYKKRNQ
HEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHEEECCCC
KINTK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]