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The map label for this gene is ompR [H]

Identifier: 209693817

GI number: 209693817

Start: 245950

End: 246669

Strand: Reverse

Name: ompR [H]

Synonym: VSAL_I0204

Alternate gene names: 209693817

Gene position: 246669-245950 (Counterclockwise)

Preceding gene: 209693819

Following gene: 209693816

Centisome position: 7.42

GC content: 44.72

Gene sequence:

>720_bases
ATGCAAGAAAACCATAAGATTTTAGTTGTTGATGATGATGCGCGTCTTCGTTCTTTATTAGAGCGTTATTTGTCAGAGCA
AGGCTTTCAAGTTCGTAGTGTCGCAAACAGTGAGCAAATGGATCGCTTGTTAGCTCGTGAAACGTTTCACTTAATGGTAT
TGGACTTAATGCTTCCTGGTGAAGATGGGTTATCTATCTGTCGTCGTCTGCGCAGTAACAATAATATGCTACCTATTTTA
ATGCTAACGGCAAAAGGTGATGAGATTGATCGCATTGTTGGCTTAGAAGTGGGCGCGGACGATTATCTACCAAAGCCATT
TAACCCACGTGAATTACTGGCGCGTATTCGAGCGGTTCTACGTCGTCAAGTGATTGAAGCGCCGGGTGCGCCAAGTGCGG
AAGATAAAATGGTTGAGTTTGGTGAGTTTCGCCTAAACTTAGGTACGCGTGAAATGTTCCGTAATGAAGAGCCAATGCCA
CTAACATCGGGCGAATTTGCGGTACTTAAATCATTGGTGACGAATATGCGTGAACCAATGTCGCGTGACAAGTTGATGAA
TATGGCGCGCGGTCGTGAGTATTCAGCAATGGAGCGCTCGATTGATGTTCAAATTTCTCGCCTTCGTCGTATGATTGAAG
TTGATTCAAGCCGCCCTCGTTATATTCAAACGGTATGGGGATTAGGTTATGTGTTTGTACCGGATGGTGCAGAGGGATAG

Upstream 100 bases:

>100_bases
AAAAAGTAACAATTTCATCTATCATTTTTCATGAAATAGTTACTTTTTATGCTCACACTTATGAGTACACTGAAATAAGT
TATATATTGAGGTTAAGCCC

Downstream 100 bases:

>100_bases
AGAAGGGACGAGAGTCGAGGACGCTGCGCTCGAGGGACGAGGAAGAGCGTAGGTGAGGATTCAGGTAAAGAACTAGAAAC
TATACGCTTCGCTAACTAGA

Product: osmolarity response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MQENHKILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLMLPGEDGLSICRRLRSNNNMLPIL
MLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQVIEAPGAPSAEDKMVEFGEFRLNLGTREMFRNEEPMP
LTSGEFAVLKSLVTNMREPMSRDKLMNMARGREYSAMERSIDVQISRLRRMIEVDSSRPRYIQTVWGLGYVFVPDGAEG

Sequences:

>Translated_239_residues
MQENHKILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLMLPGEDGLSICRRLRSNNNMLPIL
MLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQVIEAPGAPSAEDKMVEFGEFRLNLGTREMFRNEEPMP
LTSGEFAVLKSLVTNMREPMSRDKLMNMARGREYSAMERSIDVQISRLRRMIEVDSSRPRYIQTVWGLGYVFVPDGAEG
>Mature_239_residues
MQENHKILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLMLPGEDGLSICRRLRSNNNMLPIL
MLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQVIEAPGAPSAEDKMVEFGEFRLNLGTREMFRNEEPMP
LTSGEFAVLKSLVTNMREPMSRDKLMNMARGREYSAMERSIDVQISRLRRMIEVDSSRPRYIQTVWGLGYVFVPDGAEG

Specific function: The N-terminus of this protein is required for the transcriptional expression of both major outer membrane protein genes ompF and ompC; its C-terminal moiety mediates the multimerization of the ompR protein. As a multimer, it turns on the expression of th

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=239, Percent_Identity=81.5899581589958, Blast_Score=411, Evalue=1e-116,
Organism=Escherichia coli, GI1786599, Length=229, Percent_Identity=36.6812227074236, Blast_Score=143, Evalue=9e-36,
Organism=Escherichia coli, GI2367329, Length=236, Percent_Identity=39.8305084745763, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1790863, Length=239, Percent_Identity=34.7280334728033, Blast_Score=138, Evalue=3e-34,
Organism=Escherichia coli, GI1787229, Length=232, Percent_Identity=33.6206896551724, Blast_Score=137, Evalue=4e-34,
Organism=Escherichia coli, GI1786784, Length=232, Percent_Identity=37.5, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1788394, Length=232, Percent_Identity=34.4827586206897, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1787375, Length=227, Percent_Identity=35.6828193832599, Blast_Score=132, Evalue=1e-32,
Organism=Escherichia coli, GI1790552, Length=230, Percent_Identity=36.5217391304348, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI145693140, Length=242, Percent_Identity=34.297520661157, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1790860, Length=228, Percent_Identity=32.0175438596491, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1786911, Length=230, Percent_Identity=34.3478260869565, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI87082012, Length=229, Percent_Identity=33.6244541484716, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1789402, Length=227, Percent_Identity=32.5991189427313, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790299, Length=123, Percent_Identity=34.1463414634146, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1788550, Length=112, Percent_Identity=29.4642857142857, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27431; Mature: 27431

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
6.3 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQENHKILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLMLPG
CCCCCEEEEECCCHHHHHHHHHHHHHCCCEEHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
EDGLSICRRLRSNNNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVL
CHHHHHHHHHHCCCCEEEEEEEEECCCCHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHH
RRQVIEAPGAPSAEDKMVEFGEFRLNLGTREMFRNEEPMPLTSGEFAVLKSLVTNMREPM
HHHHHHCCCCCCCHHHHHHHHHHEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCHH
SRDKLMNMARGREYSAMERSIDVQISRLRRMIEVDSSRPRYIQTVWGLGYVFVPDGAEG
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEECCCCCC
>Mature Secondary Structure
MQENHKILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLMLPG
CCCCCEEEEECCCHHHHHHHHHHHHHCCCEEHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
EDGLSICRRLRSNNNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVL
CHHHHHHHHHHCCCCEEEEEEEEECCCCHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHH
RRQVIEAPGAPSAEDKMVEFGEFRLNLGTREMFRNEEPMPLTSGEFAVLKSLVTNMREPM
HHHHHHCCCCCCCHHHHHHHHHHEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCHH
SRDKLMNMARGREYSAMERSIDVQISRLRRMIEVDSSRPRYIQTVWGLGYVFVPDGAEG
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]