Click here to switch to the map view.

The map label for this gene is 209693740

Identifier: 209693740

GI number: 209693740

Start: 151287

End: 151856

Strand: Reverse

Name: 209693740

Synonym: VSAL_I0117

Alternate gene names: NA

Gene position: 151856-151287 (Counterclockwise)

Preceding gene: 209693741

Following gene: 209693739

Centisome position: 4.57

GC content: 33.16

Gene sequence:

>570_bases
ATGATAACGATAACTAAATTAACTCGAACTATTCAATACTGGCAATCTGGAGATAAAGTCGCAGAAAATCATGTGTACCA
ATTTGCATATTTACAACTGCATAATATTGCCCAAAAAGAACGTAAGCGTAATGCAAAAAAATATGGTCCAGATAACGATA
TGTTCGCAGATAGTGTGAACAACACAACCTCACTCATCCATGATGCTTATATTAAACTATCAAATTCAAAACTAACCGAC
ATAAAAACCAAGCGTGATTTTTTTCTGATGATAACAAGAGTTATGCGCCAAATATTAATTGATAACGCTCGGTCATTACA
AGCAAAAAAACGCCAACCACTTGCTCCCATAAACAGAGATATTGATAAATTTGAACAATTAATCACAATGGATAAAGCAT
TAGATAATTTTGCTATTCGATACCCTCGTCAATCTAACGTCTTAAAATTAAAATACCTAATGGGAATGAAAAACACCGAG
ATTTGCCAACTATTAGAATGTAGCTCAAGTCTCGTTGAAAAAGATTTAAAATTCTCACGCTGCTGGCTTCACAGTTACAT
AATGAAATAA

Upstream 100 bases:

>100_bases
TATTCAATATCCAAGTATGAGAGATTATTTAAAATTCCACCCTATAAAATAAGTACGTTAATGGATTCTACGTTTAGAAA
AATATAGCGATATACCAATC

Downstream 100 bases:

>100_bases
TTTCATTATGTACATTTAGGTAAAATAAGCCCTTCAAACCAAAAATAGAATCACATTGTTGAAAAATAAATTTTAACTTT
ACGGTTTTTATCTTATTTCC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma Factor ECF-Like Family Protein; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma Factor

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MITITKLTRTIQYWQSGDKVAENHVYQFAYLQLHNIAQKERKRNAKKYGPDNDMFADSVNNTTSLIHDAYIKLSNSKLTD
IKTKRDFFLMITRVMRQILIDNARSLQAKKRQPLAPINRDIDKFEQLITMDKALDNFAIRYPRQSNVLKLKYLMGMKNTE
ICQLLECSSSLVEKDLKFSRCWLHSYIMK

Sequences:

>Translated_189_residues
MITITKLTRTIQYWQSGDKVAENHVYQFAYLQLHNIAQKERKRNAKKYGPDNDMFADSVNNTTSLIHDAYIKLSNSKLTD
IKTKRDFFLMITRVMRQILIDNARSLQAKKRQPLAPINRDIDKFEQLITMDKALDNFAIRYPRQSNVLKLKYLMGMKNTE
ICQLLECSSSLVEKDLKFSRCWLHSYIMK
>Mature_189_residues
MITITKLTRTIQYWQSGDKVAENHVYQFAYLQLHNIAQKERKRNAKKYGPDNDMFADSVNNTTSLIHDAYIKLSNSKLTD
IKTKRDFFLMITRVMRQILIDNARSLQAKKRQPLAPINRDIDKFEQLITMDKALDNFAIRYPRQSNVLKLKYLMGMKNTE
ICQLLECSSSLVEKDLKFSRCWLHSYIMK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22288; Mature: 22288

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITITKLTRTIQYWQSGDKVAENHVYQFAYLQLHNIAQKERKRNAKKYGPDNDMFADSVN
CEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCC
NTTSLIHDAYIKLSNSKLTDIKTKRDFFLMITRVMRQILIDNARSLQAKKRQPLAPINRD
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCC
IDKFEQLITMDKALDNFAIRYPRQSNVLKLKYLMGMKNTEICQLLECSSSLVEKDLKFSR
HHHHHHHHHHHHHHHHHHEECCCCCCEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
CWLHSYIMK
HHHHHHHCC
>Mature Secondary Structure
MITITKLTRTIQYWQSGDKVAENHVYQFAYLQLHNIAQKERKRNAKKYGPDNDMFADSVN
CEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCC
NTTSLIHDAYIKLSNSKLTDIKTKRDFFLMITRVMRQILIDNARSLQAKKRQPLAPINRD
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCC
IDKFEQLITMDKALDNFAIRYPRQSNVLKLKYLMGMKNTEICQLLECSSSLVEKDLKFSR
HHHHHHHHHHHHHHHHHHEECCCCCCEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
CWLHSYIMK
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA