| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209693739
Identifier: 209693739
GI number: 209693739
Start: 149312
End: 151027
Strand: Reverse
Name: 209693739
Synonym: VSAL_I0116
Alternate gene names: NA
Gene position: 151027-149312 (Counterclockwise)
Preceding gene: 209693740
Following gene: 209693734
Centisome position: 4.54
GC content: 36.6
Gene sequence:
>1716_bases GTGGGCTGTGGTAGTTCCGATGATGATTCAAATGATCCATCTACCAATATCGATACAGCAAAAACACAAAAACCAAGTAT TGCAATTCCAACGGCAGGGAAATTTATTGATGCAAAAGTAATTGGATTGGATTACATTTCTGGTTCACTAGAAGAGAAAA AAACAGATATAAATGGTACTTACACCATCGATACAAATAACCCTGAAATTTCGTTCTATTTAGGAGGGAAAGACGGCCTA TTCATTGGGTCTATTTCTGGTCGTCACATCACTACGCCATTTGAAGCGGCAGGTACATACCAACGTGCTGTAAATTTGGC AAGGCTATTACTGACTGTTGGTGAAGGAACAAGTACACTAATTAAAACAGGACAGGCAGTCCTAATAAAGGAAATCACTT TACCCCAAGATTTATCAGTTGCGGCTACTGAATTAAAAGAAGCCACGCTTGATGATGAAGCATCTTTACTTGCCGTTGCA ACAGCACTTAATCCTGCCATAACAGCATTAGTATCACAAGATGATGCAACAACACACATGCAATCATCTTTAGCAAACAT TCCACGCGGCTCTGATGTAAATCTATCCCATTGGTCTCGCGGTTCAAATTGGACATTTGTATCAAGGGATTCAACGCAAC GTATACGTAATAGTGCAAATCAAGAGTTCGACCTTGTTATCAATGTTGATCGTACTTTAACTGATTCTCAAGGAAATCCA CGTAATTTATTTGAAAAAACATCGAGCATGATTTTTACCTTAGCCGATAATAATCTGATTGTCCGTAAAGGCAGTAATGA TTCATCAATTAGTGGTCACTATGTTGCTGACTATCTAACTTGTTTAGATAACGATGGTATTTTCAACACAGTAGAAACGG ATGATAATGAATATAATACATGCGATGGTAATCGCATTACGGTCACTGACGAAAGATATAATTATTTTTATAACTTGGAT AATAAATACCAATATTCATTCATAAGTCCAAACAAAGAACAAATTTCAGACATAAATGAACCATGGATTGAAATTTCTGA AATGGGTGATGCTTTTGAGTGTATGAATGCTAAAAACTGTACAGAACAAGCTCTAAGTAAATTTGAAGTTTTAGAGCGTG ATGATTCTGATGAGCAAGATGGTAGCTATATGCTCGAAGAAACCATTTCTGGTACCTATGATCCAATTACGGATGTTTAT ATTAATACGACAAGTAAAAAATACTTAGATAACAGCCCATATCCCGGTCGTATCAGTGAACGAATTTCTTTCTTATACCC TGTTGAAGCATTAGGGCAAGATCGTTACGTTGACTTCATCGGCACATGGGAAAGTCGTGAATTATGTGCAAATAAAAGTA TTGCCGTTGCTAAAATGACATTCACTGAAACCGGTTTAACAATGACAGGTGAAGAGTGTGGTACTTTAGGTTTTATCAAT AAAACCCACACATACGCGCAACTATCACCTAAAGACTTATGGTGGTTTGGCACGAATGACGCTGGCGACTCAAAAGCAAC ACTCGATCAATTAAACAGTACTGTTCGTTGGAATGATAAAAATTCTACCGATGATCCTAATAATATTAAAATCAATCGCT TTACTTACATCCCTGCTGGAAAAAACTGGGATCAAGGCTTATTAATTCGTGATACGTTAAATTTAGATGGTACAAAAAAA TCAACGATTACAATGAAGAAAATTAAGTCACTCTAA
Upstream 100 bases:
>100_bases TAACATATGAAGGTTAGGCTACCCGATATGACAAAGGATTAAAATAAGAATGAAAAAGGTAAGTTTATTAGCAGCGTCAG TAACATTGGCATTAACTTTA
Downstream 100 bases:
>100_bases TTTGAATAAAATTTAAAGACCCAACAAAACCCCGGTACTTGTCGGGGTTTATTATATCTGCCTTTTCATTCCTCTTCCGC TTCCAACTAAAATATAAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 571; Mature: 570
Protein sequence:
>571_residues MGCGSSDDDSNDPSTNIDTAKTQKPSIAIPTAGKFIDAKVIGLDYISGSLEEKKTDINGTYTIDTNNPEISFYLGGKDGL FIGSISGRHITTPFEAAGTYQRAVNLARLLLTVGEGTSTLIKTGQAVLIKEITLPQDLSVAATELKEATLDDEASLLAVA TALNPAITALVSQDDATTHMQSSLANIPRGSDVNLSHWSRGSNWTFVSRDSTQRIRNSANQEFDLVINVDRTLTDSQGNP RNLFEKTSSMIFTLADNNLIVRKGSNDSSISGHYVADYLTCLDNDGIFNTVETDDNEYNTCDGNRITVTDERYNYFYNLD NKYQYSFISPNKEQISDINEPWIEISEMGDAFECMNAKNCTEQALSKFEVLERDDSDEQDGSYMLEETISGTYDPITDVY INTTSKKYLDNSPYPGRISERISFLYPVEALGQDRYVDFIGTWESRELCANKSIAVAKMTFTETGLTMTGEECGTLGFIN KTHTYAQLSPKDLWWFGTNDAGDSKATLDQLNSTVRWNDKNSTDDPNNIKINRFTYIPAGKNWDQGLLIRDTLNLDGTKK STITMKKIKSL
Sequences:
>Translated_571_residues MGCGSSDDDSNDPSTNIDTAKTQKPSIAIPTAGKFIDAKVIGLDYISGSLEEKKTDINGTYTIDTNNPEISFYLGGKDGL FIGSISGRHITTPFEAAGTYQRAVNLARLLLTVGEGTSTLIKTGQAVLIKEITLPQDLSVAATELKEATLDDEASLLAVA TALNPAITALVSQDDATTHMQSSLANIPRGSDVNLSHWSRGSNWTFVSRDSTQRIRNSANQEFDLVINVDRTLTDSQGNP RNLFEKTSSMIFTLADNNLIVRKGSNDSSISGHYVADYLTCLDNDGIFNTVETDDNEYNTCDGNRITVTDERYNYFYNLD NKYQYSFISPNKEQISDINEPWIEISEMGDAFECMNAKNCTEQALSKFEVLERDDSDEQDGSYMLEETISGTYDPITDVY INTTSKKYLDNSPYPGRISERISFLYPVEALGQDRYVDFIGTWESRELCANKSIAVAKMTFTETGLTMTGEECGTLGFIN KTHTYAQLSPKDLWWFGTNDAGDSKATLDQLNSTVRWNDKNSTDDPNNIKINRFTYIPAGKNWDQGLLIRDTLNLDGTKK STITMKKIKSL >Mature_570_residues GCGSSDDDSNDPSTNIDTAKTQKPSIAIPTAGKFIDAKVIGLDYISGSLEEKKTDINGTYTIDTNNPEISFYLGGKDGLF IGSISGRHITTPFEAAGTYQRAVNLARLLLTVGEGTSTLIKTGQAVLIKEITLPQDLSVAATELKEATLDDEASLLAVAT ALNPAITALVSQDDATTHMQSSLANIPRGSDVNLSHWSRGSNWTFVSRDSTQRIRNSANQEFDLVINVDRTLTDSQGNPR NLFEKTSSMIFTLADNNLIVRKGSNDSSISGHYVADYLTCLDNDGIFNTVETDDNEYNTCDGNRITVTDERYNYFYNLDN KYQYSFISPNKEQISDINEPWIEISEMGDAFECMNAKNCTEQALSKFEVLERDDSDEQDGSYMLEETISGTYDPITDVYI NTTSKKYLDNSPYPGRISERISFLYPVEALGQDRYVDFIGTWESRELCANKSIAVAKMTFTETGLTMTGEECGTLGFINK THTYAQLSPKDLWWFGTNDAGDSKATLDQLNSTVRWNDKNSTDDPNNIKINRFTYIPAGKNWDQGLLIRDTLNLDGTKKS TITMKKIKSL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63306; Mature: 63174
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGCGSSDDDSNDPSTNIDTAKTQKPSIAIPTAGKFIDAKVIGLDYISGSLEEKKTDINGT CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEEEEHHCCCHHHHCCCCCEE YTIDTNNPEISFYLGGKDGLFIGSISGRHITTPFEAAGTYQRAVNLARLLLTVGEGTSTL EEEECCCCEEEEEECCCCCEEEECCCCCEECCCHHHCCHHHHHHHHHHHHEEECCCCHHH IKTGQAVLIKEITLPQDLSVAATELKEATLDDEASLLAVATALNPAITALVSQDDATTHM HHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEHHCCCCEEEEECCCCHHHHH QSSLANIPRGSDVNLSHWSRGSNWTFVSRDSTQRIRNSANQEFDLVINVDRTLTDSQGNP HHHHHCCCCCCCCCHHHCCCCCCEEEEECCHHHHHHHCCCCCEEEEEEECCEEECCCCCH RNLFEKTSSMIFTLADNNLIVRKGSNDSSISGHYVADYLTCLDNDGIFNTVETDDNEYNT HHHHHHCCCEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC CDGNRITVTDERYNYFYNLDNKYQYSFISPNKEQISDINEPWIEISEMGDAFECMNAKNC CCCCEEEEEECCEEEEEECCCEEEEEEECCCHHHHHCCCCCCEEHHHCCCHHHHCCCCCH TEQALSKFEVLERDDSDEQDGSYMLEETISGTYDPITDVYINTTSKKYLDNSPYPGRISE HHHHHHHHHHHHCCCCCCCCCCEEHHHHHCCCCCCCEEEEEECCCHHHCCCCCCCCCHHH RISFLYPVEALGQDRYVDFIGTWESRELCANKSIAVAKMTFTETGLTMTGEECGTLGFIN HHEEEECHHHCCCCCEEEEEECCCCHHHHCCCCEEEEEEEEEECCCEEECCCCCEEECCC KTHTYAQLSPKDLWWFGTNDAGDSKATLDQLNSTVRWNDKNSTDDPNNIKINRFTYIPAG CCCEEEEECCCEEEEEECCCCCCCHHHHHHCCCEEEECCCCCCCCCCCEEEEEEEEECCC KNWDQGLLIRDTLNLDGTKKSTITMKKIKSL CCCCCCEEEEEECCCCCCCCCEEEHHHHHCC >Mature Secondary Structure GCGSSDDDSNDPSTNIDTAKTQKPSIAIPTAGKFIDAKVIGLDYISGSLEEKKTDINGT CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEEEEHHCCCHHHHCCCCCEE YTIDTNNPEISFYLGGKDGLFIGSISGRHITTPFEAAGTYQRAVNLARLLLTVGEGTSTL EEEECCCCEEEEEECCCCCEEEECCCCCEECCCHHHCCHHHHHHHHHHHHEEECCCCHHH IKTGQAVLIKEITLPQDLSVAATELKEATLDDEASLLAVATALNPAITALVSQDDATTHM HHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEHHCCCCEEEEECCCCHHHHH QSSLANIPRGSDVNLSHWSRGSNWTFVSRDSTQRIRNSANQEFDLVINVDRTLTDSQGNP HHHHHCCCCCCCCCHHHCCCCCCEEEEECCHHHHHHHCCCCCEEEEEEECCEEECCCCCH RNLFEKTSSMIFTLADNNLIVRKGSNDSSISGHYVADYLTCLDNDGIFNTVETDDNEYNT HHHHHHCCCEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC CDGNRITVTDERYNYFYNLDNKYQYSFISPNKEQISDINEPWIEISEMGDAFECMNAKNC CCCCEEEEEECCEEEEEECCCEEEEEEECCCHHHHHCCCCCCEEHHHCCCHHHHCCCCCH TEQALSKFEVLERDDSDEQDGSYMLEETISGTYDPITDVYINTTSKKYLDNSPYPGRISE HHHHHHHHHHHHCCCCCCCCCCEEHHHHHCCCCCCCEEEEEECCCHHHCCCCCCCCCHHH RISFLYPVEALGQDRYVDFIGTWESRELCANKSIAVAKMTFTETGLTMTGEECGTLGFIN HHEEEECHHHCCCCCEEEEEECCCCHHHHCCCCEEEEEEEEEECCCEEECCCCCEEECCC KTHTYAQLSPKDLWWFGTNDAGDSKATLDQLNSTVRWNDKNSTDDPNNIKINRFTYIPAG CCCEEEEECCCEEEEEECCCCCCCHHHHHHCCCEEEECCCCCCCCCCCEEEEEEEEECCC KNWDQGLLIRDTLNLDGTKKSTITMKKIKSL CCCCCCEEEEEECCCCCCCCCEEEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA