Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209693739

Identifier: 209693739

GI number: 209693739

Start: 149312

End: 151027

Strand: Reverse

Name: 209693739

Synonym: VSAL_I0116

Alternate gene names: NA

Gene position: 151027-149312 (Counterclockwise)

Preceding gene: 209693740

Following gene: 209693734

Centisome position: 4.54

GC content: 36.6

Gene sequence:

>1716_bases
GTGGGCTGTGGTAGTTCCGATGATGATTCAAATGATCCATCTACCAATATCGATACAGCAAAAACACAAAAACCAAGTAT
TGCAATTCCAACGGCAGGGAAATTTATTGATGCAAAAGTAATTGGATTGGATTACATTTCTGGTTCACTAGAAGAGAAAA
AAACAGATATAAATGGTACTTACACCATCGATACAAATAACCCTGAAATTTCGTTCTATTTAGGAGGGAAAGACGGCCTA
TTCATTGGGTCTATTTCTGGTCGTCACATCACTACGCCATTTGAAGCGGCAGGTACATACCAACGTGCTGTAAATTTGGC
AAGGCTATTACTGACTGTTGGTGAAGGAACAAGTACACTAATTAAAACAGGACAGGCAGTCCTAATAAAGGAAATCACTT
TACCCCAAGATTTATCAGTTGCGGCTACTGAATTAAAAGAAGCCACGCTTGATGATGAAGCATCTTTACTTGCCGTTGCA
ACAGCACTTAATCCTGCCATAACAGCATTAGTATCACAAGATGATGCAACAACACACATGCAATCATCTTTAGCAAACAT
TCCACGCGGCTCTGATGTAAATCTATCCCATTGGTCTCGCGGTTCAAATTGGACATTTGTATCAAGGGATTCAACGCAAC
GTATACGTAATAGTGCAAATCAAGAGTTCGACCTTGTTATCAATGTTGATCGTACTTTAACTGATTCTCAAGGAAATCCA
CGTAATTTATTTGAAAAAACATCGAGCATGATTTTTACCTTAGCCGATAATAATCTGATTGTCCGTAAAGGCAGTAATGA
TTCATCAATTAGTGGTCACTATGTTGCTGACTATCTAACTTGTTTAGATAACGATGGTATTTTCAACACAGTAGAAACGG
ATGATAATGAATATAATACATGCGATGGTAATCGCATTACGGTCACTGACGAAAGATATAATTATTTTTATAACTTGGAT
AATAAATACCAATATTCATTCATAAGTCCAAACAAAGAACAAATTTCAGACATAAATGAACCATGGATTGAAATTTCTGA
AATGGGTGATGCTTTTGAGTGTATGAATGCTAAAAACTGTACAGAACAAGCTCTAAGTAAATTTGAAGTTTTAGAGCGTG
ATGATTCTGATGAGCAAGATGGTAGCTATATGCTCGAAGAAACCATTTCTGGTACCTATGATCCAATTACGGATGTTTAT
ATTAATACGACAAGTAAAAAATACTTAGATAACAGCCCATATCCCGGTCGTATCAGTGAACGAATTTCTTTCTTATACCC
TGTTGAAGCATTAGGGCAAGATCGTTACGTTGACTTCATCGGCACATGGGAAAGTCGTGAATTATGTGCAAATAAAAGTA
TTGCCGTTGCTAAAATGACATTCACTGAAACCGGTTTAACAATGACAGGTGAAGAGTGTGGTACTTTAGGTTTTATCAAT
AAAACCCACACATACGCGCAACTATCACCTAAAGACTTATGGTGGTTTGGCACGAATGACGCTGGCGACTCAAAAGCAAC
ACTCGATCAATTAAACAGTACTGTTCGTTGGAATGATAAAAATTCTACCGATGATCCTAATAATATTAAAATCAATCGCT
TTACTTACATCCCTGCTGGAAAAAACTGGGATCAAGGCTTATTAATTCGTGATACGTTAAATTTAGATGGTACAAAAAAA
TCAACGATTACAATGAAGAAAATTAAGTCACTCTAA

Upstream 100 bases:

>100_bases
TAACATATGAAGGTTAGGCTACCCGATATGACAAAGGATTAAAATAAGAATGAAAAAGGTAAGTTTATTAGCAGCGTCAG
TAACATTGGCATTAACTTTA

Downstream 100 bases:

>100_bases
TTTGAATAAAATTTAAAGACCCAACAAAACCCCGGTACTTGTCGGGGTTTATTATATCTGCCTTTTCATTCCTCTTCCGC
TTCCAACTAAAATATAAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 571; Mature: 570

Protein sequence:

>571_residues
MGCGSSDDDSNDPSTNIDTAKTQKPSIAIPTAGKFIDAKVIGLDYISGSLEEKKTDINGTYTIDTNNPEISFYLGGKDGL
FIGSISGRHITTPFEAAGTYQRAVNLARLLLTVGEGTSTLIKTGQAVLIKEITLPQDLSVAATELKEATLDDEASLLAVA
TALNPAITALVSQDDATTHMQSSLANIPRGSDVNLSHWSRGSNWTFVSRDSTQRIRNSANQEFDLVINVDRTLTDSQGNP
RNLFEKTSSMIFTLADNNLIVRKGSNDSSISGHYVADYLTCLDNDGIFNTVETDDNEYNTCDGNRITVTDERYNYFYNLD
NKYQYSFISPNKEQISDINEPWIEISEMGDAFECMNAKNCTEQALSKFEVLERDDSDEQDGSYMLEETISGTYDPITDVY
INTTSKKYLDNSPYPGRISERISFLYPVEALGQDRYVDFIGTWESRELCANKSIAVAKMTFTETGLTMTGEECGTLGFIN
KTHTYAQLSPKDLWWFGTNDAGDSKATLDQLNSTVRWNDKNSTDDPNNIKINRFTYIPAGKNWDQGLLIRDTLNLDGTKK
STITMKKIKSL

Sequences:

>Translated_571_residues
MGCGSSDDDSNDPSTNIDTAKTQKPSIAIPTAGKFIDAKVIGLDYISGSLEEKKTDINGTYTIDTNNPEISFYLGGKDGL
FIGSISGRHITTPFEAAGTYQRAVNLARLLLTVGEGTSTLIKTGQAVLIKEITLPQDLSVAATELKEATLDDEASLLAVA
TALNPAITALVSQDDATTHMQSSLANIPRGSDVNLSHWSRGSNWTFVSRDSTQRIRNSANQEFDLVINVDRTLTDSQGNP
RNLFEKTSSMIFTLADNNLIVRKGSNDSSISGHYVADYLTCLDNDGIFNTVETDDNEYNTCDGNRITVTDERYNYFYNLD
NKYQYSFISPNKEQISDINEPWIEISEMGDAFECMNAKNCTEQALSKFEVLERDDSDEQDGSYMLEETISGTYDPITDVY
INTTSKKYLDNSPYPGRISERISFLYPVEALGQDRYVDFIGTWESRELCANKSIAVAKMTFTETGLTMTGEECGTLGFIN
KTHTYAQLSPKDLWWFGTNDAGDSKATLDQLNSTVRWNDKNSTDDPNNIKINRFTYIPAGKNWDQGLLIRDTLNLDGTKK
STITMKKIKSL
>Mature_570_residues
GCGSSDDDSNDPSTNIDTAKTQKPSIAIPTAGKFIDAKVIGLDYISGSLEEKKTDINGTYTIDTNNPEISFYLGGKDGLF
IGSISGRHITTPFEAAGTYQRAVNLARLLLTVGEGTSTLIKTGQAVLIKEITLPQDLSVAATELKEATLDDEASLLAVAT
ALNPAITALVSQDDATTHMQSSLANIPRGSDVNLSHWSRGSNWTFVSRDSTQRIRNSANQEFDLVINVDRTLTDSQGNPR
NLFEKTSSMIFTLADNNLIVRKGSNDSSISGHYVADYLTCLDNDGIFNTVETDDNEYNTCDGNRITVTDERYNYFYNLDN
KYQYSFISPNKEQISDINEPWIEISEMGDAFECMNAKNCTEQALSKFEVLERDDSDEQDGSYMLEETISGTYDPITDVYI
NTTSKKYLDNSPYPGRISERISFLYPVEALGQDRYVDFIGTWESRELCANKSIAVAKMTFTETGLTMTGEECGTLGFINK
THTYAQLSPKDLWWFGTNDAGDSKATLDQLNSTVRWNDKNSTDDPNNIKINRFTYIPAGKNWDQGLLIRDTLNLDGTKKS
TITMKKIKSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63306; Mature: 63174

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGCGSSDDDSNDPSTNIDTAKTQKPSIAIPTAGKFIDAKVIGLDYISGSLEEKKTDINGT
CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEEEEHHCCCHHHHCCCCCEE
YTIDTNNPEISFYLGGKDGLFIGSISGRHITTPFEAAGTYQRAVNLARLLLTVGEGTSTL
EEEECCCCEEEEEECCCCCEEEECCCCCEECCCHHHCCHHHHHHHHHHHHEEECCCCHHH
IKTGQAVLIKEITLPQDLSVAATELKEATLDDEASLLAVATALNPAITALVSQDDATTHM
HHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEHHCCCCEEEEECCCCHHHHH
QSSLANIPRGSDVNLSHWSRGSNWTFVSRDSTQRIRNSANQEFDLVINVDRTLTDSQGNP
HHHHHCCCCCCCCCHHHCCCCCCEEEEECCHHHHHHHCCCCCEEEEEEECCEEECCCCCH
RNLFEKTSSMIFTLADNNLIVRKGSNDSSISGHYVADYLTCLDNDGIFNTVETDDNEYNT
HHHHHHCCCEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC
CDGNRITVTDERYNYFYNLDNKYQYSFISPNKEQISDINEPWIEISEMGDAFECMNAKNC
CCCCEEEEEECCEEEEEECCCEEEEEEECCCHHHHHCCCCCCEEHHHCCCHHHHCCCCCH
TEQALSKFEVLERDDSDEQDGSYMLEETISGTYDPITDVYINTTSKKYLDNSPYPGRISE
HHHHHHHHHHHHCCCCCCCCCCEEHHHHHCCCCCCCEEEEEECCCHHHCCCCCCCCCHHH
RISFLYPVEALGQDRYVDFIGTWESRELCANKSIAVAKMTFTETGLTMTGEECGTLGFIN
HHEEEECHHHCCCCCEEEEEECCCCHHHHCCCCEEEEEEEEEECCCEEECCCCCEEECCC
KTHTYAQLSPKDLWWFGTNDAGDSKATLDQLNSTVRWNDKNSTDDPNNIKINRFTYIPAG
CCCEEEEECCCEEEEEECCCCCCCHHHHHHCCCEEEECCCCCCCCCCCEEEEEEEEECCC
KNWDQGLLIRDTLNLDGTKKSTITMKKIKSL
CCCCCCEEEEEECCCCCCCCCEEEHHHHHCC
>Mature Secondary Structure 
GCGSSDDDSNDPSTNIDTAKTQKPSIAIPTAGKFIDAKVIGLDYISGSLEEKKTDINGT
CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEEEEHHCCCHHHHCCCCCEE
YTIDTNNPEISFYLGGKDGLFIGSISGRHITTPFEAAGTYQRAVNLARLLLTVGEGTSTL
EEEECCCCEEEEEECCCCCEEEECCCCCEECCCHHHCCHHHHHHHHHHHHEEECCCCHHH
IKTGQAVLIKEITLPQDLSVAATELKEATLDDEASLLAVATALNPAITALVSQDDATTHM
HHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEHHCCCCEEEEECCCCHHHHH
QSSLANIPRGSDVNLSHWSRGSNWTFVSRDSTQRIRNSANQEFDLVINVDRTLTDSQGNP
HHHHHCCCCCCCCCHHHCCCCCCEEEEECCHHHHHHHCCCCCEEEEEEECCEEECCCCCH
RNLFEKTSSMIFTLADNNLIVRKGSNDSSISGHYVADYLTCLDNDGIFNTVETDDNEYNT
HHHHHHCCCEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC
CDGNRITVTDERYNYFYNLDNKYQYSFISPNKEQISDINEPWIEISEMGDAFECMNAKNC
CCCCEEEEEECCEEEEEECCCEEEEEEECCCHHHHHCCCCCCEEHHHCCCHHHHCCCCCH
TEQALSKFEVLERDDSDEQDGSYMLEETISGTYDPITDVYINTTSKKYLDNSPYPGRISE
HHHHHHHHHHHHCCCCCCCCCCEEHHHHHCCCCCCCEEEEEECCCHHHCCCCCCCCCHHH
RISFLYPVEALGQDRYVDFIGTWESRELCANKSIAVAKMTFTETGLTMTGEECGTLGFIN
HHEEEECHHHCCCCCEEEEEECCCCHHHHCCCCEEEEEEEEEECCCEEECCCCCEEECCC
KTHTYAQLSPKDLWWFGTNDAGDSKATLDQLNSTVRWNDKNSTDDPNNIKINRFTYIPAG
CCCEEEEECCCEEEEEECCCCCCCHHHHHHCCCEEEECCCCCCCCCCCEEEEEEEEECCC
KNWDQGLLIRDTLNLDGTKKSTITMKKIKSL
CCCCCCEEEEEECCCCCCCCCEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA