Click here to switch to the map view.

The map label for this gene is cspV [H]

Identifier: 209693681

GI number: 209693681

Start: 54711

End: 54920

Strand: Reverse

Name: cspV [H]

Synonym: VSAL_I0051

Alternate gene names: 209693681

Gene position: 54920-54711 (Counterclockwise)

Preceding gene: 209693682

Following gene: 209693680

Centisome position: 1.65

GC content: 42.38

Gene sequence:

>210_bases
ATGTCTAAAACAACTGGTATCGTTAAGTGGTTTAACGAAGAGAAAGGTTTCGGCTTCATTACTCAAGATAACGGCGGCGC
TGACGTATTCGTTCACTTCCGTGCAATCGCATCTGAAGGTTTTAAAACTCTGAAAGAAGGCCAAAAGGTTTCTTTCGAAG
TTGAACAAGGTCAAAAAGGCCCACAAGCTAGCAACGTTGTTGGCGAATAA

Upstream 100 bases:

>100_bases
GAAGCTTTTTTACATATGTTTTACCTCAAATAAATAATTCTTTATGGCTACAACTTCGCATTATGCGAATTATTTAATTA
AAAAAATTAGGATATACACT

Downstream 100 bases:

>100_bases
TTCGAACTTTCGAATTGAATTTTAAAAAATGCTGACTTCGGTCAGCATTTTTTTTACCTGTTATTTCAATAACAGAACAA
TAGGCGCCTACGGCGCAAAT

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSKTTGIVKWFNEEKGFGFITQDNGGADVFVHFRAIASEGFKTLKEGQKVSFEVEQGQKGPQASNVVGE

Sequences:

>Translated_69_residues
MSKTTGIVKWFNEEKGFGFITQDNGGADVFVHFRAIASEGFKTLKEGQKVSFEVEQGQKGPQASNVVGE
>Mature_68_residues
SKTTGIVKWFNEEKGFGFITQDNGGADVFVHFRAIASEGFKTLKEGQKVSFEVEQGQKGPQASNVVGE

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=66.6666666666667, Blast_Score=96, Evalue=4e-22,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=67.6923076923077, Blast_Score=96, Evalue=7e-22,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=64.7058823529412, Blast_Score=94, Evalue=2e-21,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=66.6666666666667, Blast_Score=90, Evalue=3e-20,
Organism=Escherichia coli, GI1787839, Length=66, Percent_Identity=59.0909090909091, Blast_Score=89, Evalue=7e-20,
Organism=Escherichia coli, GI1787834, Length=67, Percent_Identity=62.6865671641791, Blast_Score=86, Evalue=3e-19,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=54.8387096774194, Blast_Score=75, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7524; Mature: 7393

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTTGIVKWFNEEKGFGFITQDNGGADVFVHFRAIASEGFKTLKEGQKVSFEVEQGQKG
CCCCCCEEEEECCCCCCEEEEECCCCCEEEEEEEHHHHHHHHHHHCCCEEEEEECCCCCC
PQASNVVGE
CCCCCCCCC
>Mature Secondary Structure 
SKTTGIVKWFNEEKGFGFITQDNGGADVFVHFRAIASEGFKTLKEGQKVSFEVEQGQKG
CCCCCEEEEECCCCCCEEEEECCCCCEEEEEEEHHHHHHHHHHHCCCEEEEEECCCCCC
PQASNVVGE
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10483731 [H]