Click here to switch to the map view.

The map label for this gene is yecS [H]

Identifier: 209552105

GI number: 209552105

Start: 198384

End: 199052

Strand: Reverse

Name: yecS [H]

Synonym: Rleg2_6256

Alternate gene names: 209552105

Gene position: 199052-198384 (Counterclockwise)

Preceding gene: 209552106

Following gene: 209552104

Centisome position: 64.47

GC content: 53.96

Gene sequence:

>669_bases
ATGGCCAGTTTTGATATCACGTTCGTTGCGAAGTACTGGCAGACCCTATTATCAGGCTTGGGTCTCACACTTGAGTTCAC
TGCTATCTGCATCGTATCAGGCACGTTACTCGGCTTGCTTCTCGCCCTAATGTCACGCTCGCCGAATGCCCTTGTTCGCA
CGCTGGTTAGAATGTACGTCGAACTCATCCGCGGCGTGCCCGTTCTCATTCTGCTGTTCTGGATCTTCTTCTGTCTCCCA
GTTGTGACAGGCCTGGAAATCAGCAACTTCTTCTCGTCGACTCTAGCACTGACTTTGTTCATGGGAGCCGCCACTTGCGA
ATCCTTCCGAGCAGCATTGAAGTCGATCCCGCATGAACAGTACGATGCTTGCACGGCGCTAGGCTTGACCAACAAGTCAA
GGCTTCTCGACGTTGTTGTGCCTCTGATGGCGATGCGCGCGATTCCCAATCTGCTGTCGAACACGGTCGCTCTGTTCAAA
GAGAGTTCGCTCGCGTCGGCGGTTGGGACCGTAGAGCTGATGTACATTGGTCAGAACATCGCGAATTCGACTGCACGCCC
CATCGAAGTGCTCACCGTAGTGGGTATCCTCTACTTCATTGTCGGCTTCGTACTTACCCGCCTTGTTTCCCTCGCAGAAA
CACGGGTTCTCAGCCGCCTCGCAACCTGA

Upstream 100 bases:

>100_bases
ACACGAGCGTCGCAATCATCTATCTCGTGATATCGGTGATATTCGGCCAGATCGCCGGGTTCATTGAACGACGCAACGAA
CTCTATCGATAGGACGGATC

Downstream 100 bases:

>100_bases
ACCCGTCATAGGATATCATTGCATGATCACGCGCGGCCACACCGACGCACGCATGAGCCAGATCGTCACGTTCCAGAATT
TTGTCTTTCTTGCAGGGCAG

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MASFDITFVAKYWQTLLSGLGLTLEFTAICIVSGTLLGLLLALMSRSPNALVRTLVRMYVELIRGVPVLILLFWIFFCLP
VVTGLEISNFFSSTLALTLFMGAATCESFRAALKSIPHEQYDACTALGLTNKSRLLDVVVPLMAMRAIPNLLSNTVALFK
ESSLASAVGTVELMYIGQNIANSTARPIEVLTVVGILYFIVGFVLTRLVSLAETRVLSRLAT

Sequences:

>Translated_222_residues
MASFDITFVAKYWQTLLSGLGLTLEFTAICIVSGTLLGLLLALMSRSPNALVRTLVRMYVELIRGVPVLILLFWIFFCLP
VVTGLEISNFFSSTLALTLFMGAATCESFRAALKSIPHEQYDACTALGLTNKSRLLDVVVPLMAMRAIPNLLSNTVALFK
ESSLASAVGTVELMYIGQNIANSTARPIEVLTVVGILYFIVGFVLTRLVSLAETRVLSRLAT
>Mature_221_residues
ASFDITFVAKYWQTLLSGLGLTLEFTAICIVSGTLLGLLLALMSRSPNALVRTLVRMYVELIRGVPVLILLFWIFFCLPV
VTGLEISNFFSSTLALTLFMGAATCESFRAALKSIPHEQYDACTALGLTNKSRLLDVVVPLMAMRAIPNLLSNTVALFKE
SSLASAVGTVELMYIGQNIANSTARPIEVLTVVGILYFIVGFVLTRLVSLAETRVLSRLAT

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=204, Percent_Identity=34.3137254901961, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1786873, Length=223, Percent_Identity=29.5964125560538, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1788645, Length=231, Percent_Identity=27.7056277056277, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1787030, Length=215, Percent_Identity=26.9767441860465, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1786874, Length=224, Percent_Identity=26.3392857142857, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87082239, Length=206, Percent_Identity=29.6116504854369, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788646, Length=195, Percent_Identity=28.2051282051282, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787086, Length=217, Percent_Identity=26.7281105990783, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1787087, Length=231, Percent_Identity=24.2424242424242, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI48994930, Length=168, Percent_Identity=27.9761904761905, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24146; Mature: 24015

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASFDITFVAKYWQTLLSGLGLTLEFTAICIVSGTLLGLLLALMSRSPNALVRTLVRMYV
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ELIRGVPVLILLFWIFFCLPVVTGLEISNFFSSTLALTLFMGAATCESFRAALKSIPHEQ
HHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
YDACTALGLTNKSRLLDVVVPLMAMRAIPNLLSNTVALFKESSLASAVGTVELMYIGQNI
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
ANSTARPIEVLTVVGILYFIVGFVLTRLVSLAETRVLSRLAT
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ASFDITFVAKYWQTLLSGLGLTLEFTAICIVSGTLLGLLLALMSRSPNALVRTLVRMYV
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ELIRGVPVLILLFWIFFCLPVVTGLEISNFFSSTLALTLFMGAATCESFRAALKSIPHEQ
HHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
YDACTALGLTNKSRLLDVVVPLMAMRAIPNLLSNTVALFKESSLASAVGTVELMYIGQNI
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
ANSTARPIEVLTVVGILYFIVGFVLTRLVSLAETRVLSRLAT
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]