Click here to switch to the map view.

The map label for this gene is yoaB [C]

Identifier: 209552104

GI number: 209552104

Start: 198005

End: 198361

Strand: Reverse

Name: yoaB [C]

Synonym: Rleg2_6255

Alternate gene names: 209552104

Gene position: 198361-198005 (Counterclockwise)

Preceding gene: 209552105

Following gene: 209552103

Centisome position: 64.25

GC content: 58.54

Gene sequence:

>357_bases
ATGATCACGCGCGGCCACACCGACGCACGCATGAGCCAGATCGTCACGTTCCAGAATTTTGTCTTTCTTGCAGGGCAGGT
GGGCAACCCGGGCGATGACATCGTCAAGCAAACGCTTGATACGCTCTCGAAAATCGATGCCTTGCTTTCCGAAGCAAATT
CGTCCCGCGAGCAGATCTTGCACGCCCAGATCTGGCTCGACGACATGCGAGACTTCGCCGCGGTGAACAAGGTCTGGGAA
GAGTGGATGCCATCCGGACACGCGCCAGCAAGAGCCTCCGGCGAAGTCCGGGTAGGACGACCGGGGCTCAAGGTCGAAAT
TCTGGTCACGGCGGCACAGATCCAGCCGTCATATTGA

Upstream 100 bases:

>100_bases
TACTTCATTGTCGGCTTCGTACTTACCCGCCTTGTTTCCCTCGCAGAAACACGGGTTCTCAGCCGCCTCGCAACCTGAAC
CCGTCATAGGATATCATTGC

Downstream 100 bases:

>100_bases
TCCCGCCGAGCTCGCGCGAACGATTTCGTTTCTGTTGAGCGATGATGCGATGGTCATTCCGCGGTCAAGCGATCAATGCA
GATGGCTGCGATACACCATA

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MITRGHTDARMSQIVTFQNFVFLAGQVGNPGDDIVKQTLDTLSKIDALLSEANSSREQILHAQIWLDDMRDFAAVNKVWE
EWMPSGHAPARASGEVRVGRPGLKVEILVTAAQIQPSY

Sequences:

>Translated_118_residues
MITRGHTDARMSQIVTFQNFVFLAGQVGNPGDDIVKQTLDTLSKIDALLSEANSSREQILHAQIWLDDMRDFAAVNKVWE
EWMPSGHAPARASGEVRVGRPGLKVEILVTAAQIQPSY
>Mature_118_residues
MITRGHTDARMSQIVTFQNFVFLAGQVGNPGDDIVKQTLDTLSKIDALLSEANSSREQILHAQIWLDDMRDFAAVNKVWE
EWMPSGHAPARASGEVRVGRPGLKVEILVTAAQIQPSY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=111, Percent_Identity=40.5405405405405, Blast_Score=88, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13061; Mature: 13061

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITRGHTDARMSQIVTFQNFVFLAGQVGNPGDDIVKQTLDTLSKIDALLSEANSSREQIL
CCCCCCCHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
HAQIWLDDMRDFAAVNKVWEEWMPSGHAPARASGEVRVGRPGLKVEILVTAAQIQPSY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEECCCCCC
>Mature Secondary Structure
MITRGHTDARMSQIVTFQNFVFLAGQVGNPGDDIVKQTLDTLSKIDALLSEANSSREQIL
CCCCCCCHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
HAQIWLDDMRDFAAVNKVWEEWMPSGHAPARASGEVRVGRPGLKVEILVTAAQIQPSY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA