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The map label for this gene is yfdE [H]

Identifier: 209551984

GI number: 209551984

Start: 54800

End: 55951

Strand: Reverse

Name: yfdE [H]

Synonym: Rleg2_6122

Alternate gene names: 209551984

Gene position: 55951-54800 (Counterclockwise)

Preceding gene: 209551987

Following gene: 209551983

Centisome position: 18.12

GC content: 58.51

Gene sequence:

>1152_bases
ATGCAAACCTCCCATCCGCTTTCAGGCATAACGGTGGTAAGCATCGAGCATGCTATCGCAGCGCCGTTTTGCACGCGCCA
TCTCGCCGATCTGGGCGCGCGGGTAATAAAGGTTGAGAGACCGGGCGAGGGCGATTTCGCCCGCGCGTATGACAACCGCG
CCCGCGGGATGGCCTCGCATTTCGTGTGGGTCAACAGATCGAAGGAAAGTCTCGCACTCGACTTGAAAAACTCTGAGGAA
CTCGAAGCGCTACATCACTTGTTGGAGTCGGCCGATGTGTTCGTCCAGAATCTCGCTCCGGGCGCTGCGGACCGGATGGG
TCTCAATTTCGATACTCTTTCAAAACGCAACGCCGGCCTGATTGTGTGCGATATCTCCGGCTATGGCTCGAATGGGCCCT
ACCGCGGAAAAAAGGCATATGACCTTCTTATTCAGAGCGAAGCGGGTTTCCTGTCCGTCACGGGGACCGAGGGTGGGCCG
GTCAAGGCCGGATGCTCCATAGCCGATATATCGGCGGGCATGTATGCTTATAGCTCGATTTTGGCAGCCCTGATCCAGCG
CGGCAAATCGGGGAAGGGATGCCGCATCGACGTCTCGATGCTGGAGTGCATGGCAGAGTGGATGGGGTTCCCTCTCTACT
ACGCTCTCGATGGCGCTCCGCCGCCAATTCCGTCCGGGGCATCGCACGCAAGCATATTCCCGTACGGTCCTTTCGCCGCT
GGAGACAAGCGAACGGTGATGCTCGGAATCCAAAACGAACGCGAATGGGCTAAATTCTGCGAACAAGTTCTGGAGCAGCC
CGAACTTCGAAATGATGATCGGTTCGACACAAACTCAAAACGCTCGGCGGCAAGGGCTGAACTAACTGAGATCATCCTCC
AAGCTTTCGCGCCTCTTACCGCCCAGGAGGTTATTGCTCGGCTCGAGAAGGCGGACATCGCCAATGCGGAGGTGAGGAAC
ATGCAGCAGGTGTGGGATCACCCGCAGTTGCGCGCGCGCGGCCGATGGATGGAAATCGATACTCCGGTGGGTCCGATGCC
TGCGCTTATGCCCCCCGGCTTACCTGATGGCGTCGCACCTTACATCGGCCCTGTCCCCCGCGTTGGCCAGCACAATGAAG
CAATACTCGGGGAGTTGAAGGCGCCGGCATGA

Upstream 100 bases:

>100_bases
AACTATGGATTTCCTGAAAACACGTTATTGGACTGTATGACCCTCCGTGAGCGATGTTGTCGCGGACGGCACCAGTGACA
GAGCCAATGAGGAACACCAT

Downstream 100 bases:

>100_bases
CATCGGTCGGTATGCGCCACGGGCGGAAGCCCGTTACCACGCGCCCTCGCGATCGAGCCGCGCCTCAAAATCCTTCGCTT
ATCATAGCAGGGCGTATGGT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MQTSHPLSGITVVSIEHAIAAPFCTRHLADLGARVIKVERPGEGDFARAYDNRARGMASHFVWVNRSKESLALDLKNSEE
LEALHHLLESADVFVQNLAPGAADRMGLNFDTLSKRNAGLIVCDISGYGSNGPYRGKKAYDLLIQSEAGFLSVTGTEGGP
VKAGCSIADISAGMYAYSSILAALIQRGKSGKGCRIDVSMLECMAEWMGFPLYYALDGAPPPIPSGASHASIFPYGPFAA
GDKRTVMLGIQNEREWAKFCEQVLEQPELRNDDRFDTNSKRSAARAELTEIILQAFAPLTAQEVIARLEKADIANAEVRN
MQQVWDHPQLRARGRWMEIDTPVGPMPALMPPGLPDGVAPYIGPVPRVGQHNEAILGELKAPA

Sequences:

>Translated_383_residues
MQTSHPLSGITVVSIEHAIAAPFCTRHLADLGARVIKVERPGEGDFARAYDNRARGMASHFVWVNRSKESLALDLKNSEE
LEALHHLLESADVFVQNLAPGAADRMGLNFDTLSKRNAGLIVCDISGYGSNGPYRGKKAYDLLIQSEAGFLSVTGTEGGP
VKAGCSIADISAGMYAYSSILAALIQRGKSGKGCRIDVSMLECMAEWMGFPLYYALDGAPPPIPSGASHASIFPYGPFAA
GDKRTVMLGIQNEREWAKFCEQVLEQPELRNDDRFDTNSKRSAARAELTEIILQAFAPLTAQEVIARLEKADIANAEVRN
MQQVWDHPQLRARGRWMEIDTPVGPMPALMPPGLPDGVAPYIGPVPRVGQHNEAILGELKAPA
>Mature_383_residues
MQTSHPLSGITVVSIEHAIAAPFCTRHLADLGARVIKVERPGEGDFARAYDNRARGMASHFVWVNRSKESLALDLKNSEE
LEALHHLLESADVFVQNLAPGAADRMGLNFDTLSKRNAGLIVCDISGYGSNGPYRGKKAYDLLIQSEAGFLSVTGTEGGP
VKAGCSIADISAGMYAYSSILAALIQRGKSGKGCRIDVSMLECMAEWMGFPLYYALDGAPPPIPSGASHASIFPYGPFAA
GDKRTVMLGIQNEREWAKFCEQVLEQPELRNDDRFDTNSKRSAARAELTEIILQAFAPLTAQEVIARLEKADIANAEVRN
MQQVWDHPQLRARGRWMEIDTPVGPMPALMPPGLPDGVAPYIGPVPRVGQHNEAILGELKAPA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=386, Percent_Identity=33.419689119171, Blast_Score=218, Evalue=8e-57,
Organism=Homo sapiens, GI300863124, Length=331, Percent_Identity=33.5347432024169, Blast_Score=206, Evalue=3e-53,
Organism=Homo sapiens, GI13376042, Length=331, Percent_Identity=30.2114803625378, Blast_Score=169, Evalue=5e-42,
Organism=Homo sapiens, GI300863126, Length=385, Percent_Identity=29.3506493506493, Blast_Score=159, Evalue=3e-39,
Organism=Homo sapiens, GI42794625, Length=389, Percent_Identity=27.2493573264781, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI266456254, Length=389, Percent_Identity=27.2493573264781, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI266458393, Length=206, Percent_Identity=32.5242718446602, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI266458397, Length=206, Percent_Identity=32.5242718446602, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI42822893, Length=158, Percent_Identity=31.6455696202532, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI266458395, Length=158, Percent_Identity=31.6455696202532, Blast_Score=72, Evalue=7e-13,
Organism=Escherichia coli, GI87082093, Length=386, Percent_Identity=30.8290155440415, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1788717, Length=404, Percent_Identity=29.2079207920792, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1786222, Length=358, Percent_Identity=28.7709497206704, Blast_Score=92, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=212, Percent_Identity=33.4905660377358, Blast_Score=98, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI115535051, Length=344, Percent_Identity=25.8720930232558, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24648431, Length=387, Percent_Identity=34.625322997416, Blast_Score=205, Evalue=4e-53,
Organism=Drosophila melanogaster, GI24585488, Length=350, Percent_Identity=25.1428571428571, Blast_Score=94, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41494; Mature: 41494

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTSHPLSGITVVSIEHAIAAPFCTRHLADLGARVIKVERPGEGDFARAYDNRARGMASH
CCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
FVWVNRSKESLALDLKNSEELEALHHLLESADVFVQNLAPGAADRMGLNFDTLSKRNAGL
EEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHCCCCCCE
IVCDISGYGSNGPYRGKKAYDLLIQSEAGFLSVTGTEGGPVKAGCSIADISAGMYAYSSI
EEEEECCCCCCCCCCCCHHEEEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
LAALIQRGKSGKGCRIDVSMLECMAEWMGFPLYYALDGAPPPIPSGASHASIFPYGPFAA
HHHHHHCCCCCCCCEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEECCCCCCCC
GDKRTVMLGIQNEREWAKFCEQVLEQPELRNDDRFDTNSKRSAARAELTEIILQAFAPLT
CCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
AQEVIARLEKADIANAEVRNMQQVWDHPQLRARGRWMEIDTPVGPMPALMPPGLPDGVAP
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCC
YIGPVPRVGQHNEAILGELKAPA
CCCCCCCCCCCCHHHHHHCCCCC
>Mature Secondary Structure
MQTSHPLSGITVVSIEHAIAAPFCTRHLADLGARVIKVERPGEGDFARAYDNRARGMASH
CCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
FVWVNRSKESLALDLKNSEELEALHHLLESADVFVQNLAPGAADRMGLNFDTLSKRNAGL
EEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHCCCCCCE
IVCDISGYGSNGPYRGKKAYDLLIQSEAGFLSVTGTEGGPVKAGCSIADISAGMYAYSSI
EEEEECCCCCCCCCCCCHHEEEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
LAALIQRGKSGKGCRIDVSMLECMAEWMGFPLYYALDGAPPPIPSGASHASIFPYGPFAA
HHHHHHCCCCCCCCEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEECCCCCCCC
GDKRTVMLGIQNEREWAKFCEQVLEQPELRNDDRFDTNSKRSAARAELTEIILQAFAPLT
CCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
AQEVIARLEKADIANAEVRNMQQVWDHPQLRARGRWMEIDTPVGPMPALMPPGLPDGVAP
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCC
YIGPVPRVGQHNEAILGELKAPA
CCCCCCCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]